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  5. Spa_g55258

Spa_g55258


Description : GARP subgroup HHO transcription factor & original description: none


Gene families : OG0001052 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001052_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g55258

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00122p00127250 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.03 OrthoFinder output from all 47 species
AT2G03500 No alias Homeodomain-like superfamily protein 0.05 OrthoFinder output from all 47 species
AT4G37180 No alias Homeodomain-like superfamily protein 0.04 OrthoFinder output from all 47 species
Adi_g019107 No alias GARP subgroup HHO transcription factor & original... 0.05 OrthoFinder output from all 47 species
Als_g21951 No alias GARP subgroup HHO transcription factor & original... 0.03 OrthoFinder output from all 47 species
Cba_g22464 No alias GARP subgroup HHO transcription factor & original... 0.07 OrthoFinder output from all 47 species
Dcu_g18561 No alias GARP subgroup HHO transcription factor & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01015462001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.06 OrthoFinder output from all 47 species
LOC_Os01g08160.1 LOC_Os01g08160 G2-like GARP transcription factor 0.04 OrthoFinder output from all 47 species
Lfl_g08106 No alias GARP subgroup HHO transcription factor & original... 0.03 OrthoFinder output from all 47 species
Msp_g25323 No alias GARP subgroup HHO transcription factor & original... 0.08 OrthoFinder output from all 47 species
Ore_g33222 No alias GARP subgroup HHO transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ore_g43039 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g14104 No alias GARP subgroup HHO transcription factor & original... 0.04 OrthoFinder output from all 47 species
Pnu_g13027 No alias GARP subgroup HHO transcription factor & original... 0.03 OrthoFinder output from all 47 species
Sam_g29341 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g37435 No alias GARP subgroup HHO transcription factor & original... 0.03 OrthoFinder output from all 47 species
Smo402040 No alias RNA biosynthesis.transcriptional activation.MYB... 0.02 OrthoFinder output from all 47 species
Solyc12g006800.2.1 Solyc12g006800 G2-like GARP transcription factor 0.05 OrthoFinder output from all 47 species
Tin_g11367 No alias GARP subgroup HHO transcription factor & original... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004435 phosphatidylinositol phospholipase C activity IEP HCCA
MF GO:0004620 phospholipase activity IEP HCCA
MF GO:0004629 phospholipase C activity IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
BP GO:0006576 biogenic amine metabolic process IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
MF GO:0008081 phosphoric diester hydrolase activity IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009143 nucleoside triphosphate catabolic process IEP HCCA
BP GO:0009308 amine metabolic process IEP HCCA
BP GO:0009309 amine biosynthetic process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016298 lipase activity IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
MF GO:0030410 nicotianamine synthase activity IEP HCCA
BP GO:0030417 nicotianamine metabolic process IEP HCCA
BP GO:0030418 nicotianamine biosynthetic process IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
BP GO:0042401 biogenic amine biosynthetic process IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:0046434 organophosphate catabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0047429 nucleoside triphosphate diphosphatase activity IEP HCCA
BP GO:0072350 tricarboxylic acid metabolic process IEP HCCA
BP GO:0072351 tricarboxylic acid biosynthetic process IEP HCCA
BP GO:1901292 nucleoside phosphate catabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001005 SANT/Myb 258 309
No external refs found!