Spa_g54818


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g54818

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00153950 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.02 OrthoFinder output from all 47 species
AMTR_s00068p00031610 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
Adi_g087181 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g16833 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g24674 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g37258 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g18037 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18504 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19047 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g23634 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g57160 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g40241 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g03430 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g03542 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g04634 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Aop_g13395 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g14000 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g18330 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g23789 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g23980 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g68130 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene50524.t1 Aspi01Gene50524 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene55840.t1 Aspi01Gene55840 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0032.g024983 No alias not classified & original description: CDS=1-3423 0.04 OrthoFinder output from all 47 species
Cba_g06485 EMB2261 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07105 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g13662 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g31665 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.09G032600.1 Ceric.09G032600 not classified & original description: pacid=50587514... 0.08 OrthoFinder output from all 47 species
Dcu_g06339 CRR22 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g08616 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g09752 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g19158 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g33116 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g38414 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g39483 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g43978 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dde_g05762 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g05942 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g12887 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g49909 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g06135 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01033906001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
GSVIVT01037377001 OTP82 Pentatricopeptide repeat-containing protein At1g08070,... 0.02 OrthoFinder output from all 47 species
LOC_Os01g15530.1 LOC_Os01g15530 Pentatricopeptide repeat-containing protein At5g56310... 0.04 OrthoFinder output from all 47 species
Len_g18025 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Len_g18960 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07754 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_119519g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
MA_205762g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 47 species
Msp_g14691 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g45873 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g46083 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g03792 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g04955 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g05890 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g27964 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g32187 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Nbi_g39950 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g42021 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Pir_g02568 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g08536 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g12503 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g30635 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g30640 CRR22 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g10481 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g31376 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g43237 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0062.g015571 No alias not classified & original description: CDS=1-1581 0.02 OrthoFinder output from all 47 species
Sam_g07845 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g16299 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g16744 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g27893 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g51436 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo91949 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
Solyc03g096610.2.1 Solyc03g096610 Pentatricopeptide repeat-containing protein At1g33350... 0.04 OrthoFinder output from all 47 species
Spa_g05402 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g21307 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g33660 No alias not classified & original description: none 0.1 OrthoFinder output from all 47 species
Spa_g53369 EMB2758 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g57153 DOT4 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e014825_P001 Zm00001e014825 Pentatricopeptide repeat-containing protein At2g27610... 0.01 OrthoFinder output from all 47 species
Zm00001e031693_P001 Zm00001e031693 Pentatricopeptide repeat-containing protein At4g14050,... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 152 174
IPR002885 Pentatricopeptide_repeat 252 279
IPR002885 Pentatricopeptide_repeat 76 122
IPR002885 Pentatricopeptide_repeat 178 225
No external refs found!