Aliases : RPL16A
Description : component *(uL5) of large ribosomal-subunit (LSU) proteome & original description: none
Gene families : OG0001936 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001936_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Spa_g54041 | |
Cluster | HCCA: Cluster_47 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00007p00200160 | RPL16A,... | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.03 | OrthoFinder output from all 47 species | |
AMTR_s00025p00203150 | RPL16A,... | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.03 | OrthoFinder output from all 47 species | |
AT2G42740 | RPL16A | ribosomal protein large subunit 16A | 0.03 | OrthoFinder output from all 47 species | |
AT3G58700 | No alias | Ribosomal L5P family protein | 0.03 | OrthoFinder output from all 47 species | |
AT4G18730 | RPL16B | ribosomal protein L16B | 0.06 | OrthoFinder output from all 47 species | |
AT5G45775 | No alias | Ribosomal L5P family protein | 0.06 | OrthoFinder output from all 47 species | |
Adi_g004325 | RPL16A | component *(uL5) of large ribosomal-subunit (LSU)... | 0.02 | OrthoFinder output from all 47 species | |
Adi_g080914 | RPL16A | component *(uL5) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
Adi_g080915 | RPL16A | component *(uL5) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
Als_g11502 | RPL16A | component *(uL5) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
Aop_g30844 | No alias | component *(uL5) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
Aop_g70327 | RPL16A | component *(uL5) of large ribosomal-subunit (LSU)... | 0.02 | OrthoFinder output from all 47 species | |
Azfi_s0350.g066549 | RPL16A | component *(uL5) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
Ceric.02G112300.1 | RPL16A, Ceric.02G112300 | component *(uL5) of large ribosomal-subunit (LSU)... | 0.07 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00020610.38 | RPL16A | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.04 | OrthoFinder output from all 47 species | |
Cre01.g027000 | RPL16A | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.05 | OrthoFinder output from all 47 species | |
Dac_g00272 | RPL16A | component *(uL5) of large ribosomal-subunit (LSU)... | 0.05 | OrthoFinder output from all 47 species | |
Dcu_g08602 | RPL16A | component *(uL5) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
Dcu_g27669 | RPL16A | component *(uL5) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
GSVIVT01020743001 | RPL16A | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.06 | OrthoFinder output from all 47 species | |
GSVIVT01021244001 | RPL16A | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.04 | OrthoFinder output from all 47 species | |
LOC_Os01g10820.1 | RPL16A, LOC_Os01g10820 | component RPL11 of LSU proteome component | 0.06 | OrthoFinder output from all 47 species | |
LOC_Os05g11710.1 | RPL16A, LOC_Os05g11710 | component RPL11 of LSU proteome component | 0.06 | OrthoFinder output from all 47 species | |
LOC_Os06g35730.1 | RPL16A, LOC_Os06g35730 | component RPL11 of LSU proteome component | 0.05 | OrthoFinder output from all 47 species | |
Lfl_g31914 | RPL16A | component *(uL5) of large ribosomal-subunit (LSU)... | 0.04 | OrthoFinder output from all 47 species | |
MA_86694g0010 | RPL16A | component RPL11 of LSU proteome component | 0.05 | OrthoFinder output from all 47 species | |
Mp2g24740.1 | RPL16A | component RPL11 of LSU proteome component | 0.06 | OrthoFinder output from all 47 species | |
Mp6g18870.1 | RPL16A | component RPL11 of LSU proteome component | 0.07 | OrthoFinder output from all 47 species | |
Msp_g09123 | No alias | component *(uL5) of large ribosomal-subunit (LSU)... | 0.02 | OrthoFinder output from all 47 species | |
Pp3c5_3870V3.1 | RPL16A, Pp3c5_3870 | Ribosomal L5P family protein | 0.03 | OrthoFinder output from all 47 species | |
Pp3c7_20160V3.1 | RPL16A, Pp3c7_20160 | ribosomal protein large subunit 16A | 0.06 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0072.g016923 | RPL16A | component *(uL5) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
Sam_g17383 | No alias | component *(uL5) of large ribosomal-subunit (LSU)... | 0.07 | OrthoFinder output from all 47 species | |
Smo444767 | RPL16A | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.03 | OrthoFinder output from all 47 species | |
Solyc02g086240.3.1 | RPL16A, Solyc02g086240 | component RPL11 of LSU proteome component | 0.08 | OrthoFinder output from all 47 species | |
Solyc07g055230.4.1 | RPL16A, Solyc07g055230 | component RPL11 of LSU proteome component | 0.07 | OrthoFinder output from all 47 species | |
Solyc10g007980.3.1 | RPL16A, Solyc10g007980 | component RPL11 of LSU proteome component | 0.06 | OrthoFinder output from all 47 species | |
Solyc12g010930.2.1 | RPL16A, Solyc12g010930 | component RPL11 of LSU proteome component | 0.07 | OrthoFinder output from all 47 species | |
Tin_g02344 | RPL16A | component *(uL5) of large ribosomal-subunit (LSU)... | 0.04 | OrthoFinder output from all 47 species | |
Zm00001e024913_P001 | RPL16A, Zm00001e024913 | component RPL11 of LSU proteome component | 0.07 | OrthoFinder output from all 47 species | |
Zm00001e026886_P003 | RPL16A, Zm00001e026886 | component RPL11 of LSU proteome component | 0.02 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
MF | GO:0003677 | DNA binding | IEP | HCCA |
MF | GO:0003723 | RNA binding | IEP | HCCA |
MF | GO:0005488 | binding | IEP | HCCA |
BP | GO:0006355 | regulation of DNA-templated transcription | IEP | HCCA |
BP | GO:0009889 | regulation of biosynthetic process | IEP | HCCA |
BP | GO:0010468 | regulation of gene expression | IEP | HCCA |
BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | HCCA |
BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | HCCA |
BP | GO:0019222 | regulation of metabolic process | IEP | HCCA |
MF | GO:0019843 | rRNA binding | IEP | HCCA |
BP | GO:0031323 | regulation of cellular metabolic process | IEP | HCCA |
BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | HCCA |
BP | GO:0050789 | regulation of biological process | IEP | HCCA |
BP | GO:0050794 | regulation of cellular process | IEP | HCCA |
BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0051252 | regulation of RNA metabolic process | IEP | HCCA |
BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | HCCA |
BP | GO:0065007 | biological regulation | IEP | HCCA |
BP | GO:0080090 | regulation of primary metabolic process | IEP | HCCA |
MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | HCCA |
BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | HCCA |
No external refs found! |