Zm00001d047401 (GRMZM2G426229)


Aliases : GRMZM2G426229

Description : 27.1.1 RNA.processing.splicing Encodes a SR spliceosome protein that is localized to nuclear specks, interacts with SR45 and the U1-70K protein of the U1 snRNP, has sequence similar to human SC35 protein. SC35-like splicing factor 33 (SR33)


Gene families : OG_01_0000558 (Gene family) Phylogenetic Tree(s): OG0000558_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Zm00001d047401
Cluster HCCA cluster: Cluster_224

Target Alias Description ECC score Gene Family Method Actions
AT3G55460 SCL30, At-SCL30 SC35-like splicing factor 30 0.04 Gene family
GSVIVT01025432001 No alias 27.1.1 RNA.processing.splicing encodes an SC35-like... 0.03 Gene family
LOC_Os02g15310 Os02g0252100 27.1.1 RNA.processing.splicing encodes an SC35-like... 0.02 Gene family
LOC_Os03g25770 Os03g0374575 27.1.1 RNA.processing.splicing Encodes a SR spliceosome... 0.02 Gene family
LOC_Os07g43950 Os07g0633200 27.1.1 RNA.processing.splicing Encodes a SR spliceosome... 0.04 Gene family
Zm00001d022243 GRMZM5G867185 27.1.1 RNA.processing.splicing Encodes a SR spliceosome... 0.03 Gene family

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000504 RRM_dom 41 110
No external refs found!