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  5. Spa_g52939

Spa_g52939


Description : not classified & original description: none


Gene families : OG0005967 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005967_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g52939

Target Alias Description ECC score Gene Family Method Actions
AT4G30825 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 OrthoFinder output from all 47 species
Adi_g016371 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Aev_g01555 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g04893 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g07385 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g21865 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene12777.t1 Aspi01Gene12777 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.16G031400.1 Ceric.16G031400 not classified & original description: pacid=50589889... 0.04 OrthoFinder output from all 47 species
Dcu_g06462 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g20213 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g05044 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Gb_06104 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.03 OrthoFinder output from all 47 species
Len_g20786 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g06728 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0039.g012097 No alias not classified & original description: CDS=661-1995 0.05 OrthoFinder output from all 47 species
Sam_g13761 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g25071 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0004359 glutaminase activity IEP HCCA
BP GO:0006081 cellular aldehyde metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006766 vitamin metabolic process IEP HCCA
BP GO:0006767 water-soluble vitamin metabolic process IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009110 vitamin biosynthetic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0042364 water-soluble vitamin biosynthetic process IEP HCCA
BP GO:0042816 vitamin B6 metabolic process IEP HCCA
BP GO:0042819 vitamin B6 biosynthetic process IEP HCCA
BP GO:0042822 pyridoxal phosphate metabolic process IEP HCCA
BP GO:0042823 pyridoxal phosphate biosynthetic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0046184 aldehyde biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0072524 pyridine-containing compound metabolic process IEP HCCA
BP GO:0072525 pyridine-containing compound biosynthetic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901615 organic hydroxy compound metabolic process IEP HCCA
BP GO:1901617 organic hydroxy compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 50 90
IPR002885 Pentatricopeptide_repeat 314 342
IPR002885 Pentatricopeptide_repeat 426 452
IPR002885 Pentatricopeptide_repeat 226 250
IPR002885 Pentatricopeptide_repeat 460 485
IPR002885 Pentatricopeptide_repeat 564 593
IPR002885 Pentatricopeptide_repeat 668 687
IPR002885 Pentatricopeptide_repeat 528 558
IPR002885 Pentatricopeptide_repeat 494 521
IPR002885 Pentatricopeptide_repeat 112 157
IPR002885 Pentatricopeptide_repeat 595 641
No external refs found!