Spa_g51764

Description : TruB-type tRNA pseudouridine synthase & original description: none

Gene families : OG0003765 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003765_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Spa_g51764

Target	Alias	Description	ECC score	Gene Family Method
Azfi_s0051.g031272	No alias	TruB-type tRNA pseudouridine synthase & original...	0.03	OrthoFinder output from all 47 species
Dac_g11405	No alias	TruB-type tRNA pseudouridine synthase & original...	0.03	OrthoFinder output from all 47 species
Dcu_g21012	No alias	TruB-type tRNA pseudouridine synthase & original...	0.04	OrthoFinder output from all 47 species
GSVIVT01032383001	No alias	RNA processing.RNA...	0.04	OrthoFinder output from all 47 species
Len_g31733	No alias	TruB-type tRNA pseudouridine synthase & original...	0.03	OrthoFinder output from all 47 species
Lfl_g34116	No alias	TruB-type tRNA pseudouridine synthase & original...	0.03	OrthoFinder output from all 47 species
Ore_g25312	No alias	TruB-type tRNA pseudouridine synthase & original...	0.02	OrthoFinder output from all 47 species
Ore_g35846	No alias	TruB-type tRNA pseudouridine synthase & original...	0.03	OrthoFinder output from all 47 species
Ppi_g02642	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Sam_g26745	No alias	TruB-type tRNA pseudouridine synthase & original...	0.05	OrthoFinder output from all 47 species
Smo75554	No alias	RNA processing.RNA...	0.03	OrthoFinder output from all 47 species
Zm00001e029672_P001	Zm00001e029672	tRNA pseudouridine synthase (TruB)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	IEP	HCCA
MF	GO:0008270	zinc ion binding	IEP	HCCA
MF	GO:0010277	chlorophyllide a oxygenase [overall] activity	IEP	HCCA
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
MF	GO:0016701	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen	IEP	HCCA
MF	GO:0016703	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases)	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA
MF	GO:0070569	uridylyltransferase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002501	PsdUridine_synth_N	392	528

External Links

No external refs found!