Spa_g51134 (CHR11)

Aliases : CHR11

Description : not classified & original description: none

Gene families : OG0000102 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000102_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Spa_g51134
Cluster	HCCA: Cluster_14

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00059p00063470	CHR01, CHR1,...	Chromatin organisation.DNA methylation.RNA-independent...	0.04	OrthoFinder output from all 47 species
Als_g01913	CHR01, CHR1,...	chromatin remodeling factor *(DDM1) & original description: none	0.06	OrthoFinder output from all 47 species
Als_g03868	CHR11	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Als_g14847	CHR5	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g09627	CHR11	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene50287.t1	CHR01, CHR1,...	chromatin remodeling factor *(DDM1) & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene66096.t1	CHR11, Aspi01Gene66096	ATPase component *(CHR11/CHR17) of ISWI chromatin...	0.03	OrthoFinder output from all 47 species
Cba_g12790	CHR01, CHR1,...	chromatin remodeling factor *(DDM1) & original description: none	0.05	OrthoFinder output from all 47 species
Ceric.02G040400.1	CHR5, Ceric.02G040400	not classified & original description: pacid=50584074...	0.05	OrthoFinder output from all 47 species
Dac_g05131	CHR01, CHR1,...	chromatin remodeling factor *(DDM1) & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g42061	CHR5	not classified & original description: none	0.06	OrthoFinder output from all 47 species
LOC_Os03g51230.2	CHR01, CHR1,...	chromatin remodeling factor (DDM1)	0.03	OrthoFinder output from all 47 species
Len_g27757	CHR01, CHR1,...	chromatin remodeling factor *(DDM1) & original description: none	0.04	OrthoFinder output from all 47 species
MA_104034g0010	CHR01, CHR1,...	chromatin remodeling factor (DDM1)	0.02	OrthoFinder output from all 47 species
Msp_g44223	CHR11	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g23435	CHR01, CHR1,...	chromatin remodeling factor *(DDM1) & original description: none	0.05	OrthoFinder output from all 47 species
Pir_g61726	CHR01, CHR1,...	chromatin remodeling factor *(DDM1) & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g12699	CHR01, CHR1,...	chromatin remodeling factor *(DDM1) & original description: none	0.05	OrthoFinder output from all 47 species
Ppi_g15409	CHR5	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g29413	CHR11	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g17278	No alias	chromatin remodeling factor *(DDM1) & original description: none	0.03	OrthoFinder output from all 47 species
Smo102612	CHR5	Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana	0.04	OrthoFinder output from all 47 species
Solyc02g062780.4.1	CHR01, CHR1,...	chromatin remodeling factor (DDM1)	0.05	OrthoFinder output from all 47 species
Solyc06g054560.3.1	CHR11, Solyc06g054560	chromatin remodeling factor (Iswi)	0.03	OrthoFinder output from all 47 species
Tin_g37141	CHR17	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e017643_P001	CHR17, Zm00001e017643	chromatin remodeling factor (Iswi)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:0140658	ATP-dependent chromatin remodeler activity	IEA	Interproscan
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0008107	galactoside 2-alpha-L-fucosyltransferase activity	IEP	HCCA
MF	GO:0008417	fucosyltransferase activity	IEP	HCCA
MF	GO:0016758	hexosyltransferase activity	IEP	HCCA
MF	GO:0031127	alpha-(1,2)-fucosyltransferase activity	IEP	HCCA
BP	GO:0042546	cell wall biogenesis	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
BP	GO:0071554	cell wall organization or biogenesis	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR019787	Znf_PHD-finger	810	853
IPR000330	SNF2_N	185	476
IPR001650	Helicase_C	497	610

External Links

No external refs found!

Spa_g51134 (CHR11)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation