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  5. Spa_g50740

Spa_g50740


Description : regulatory protein of RNA homeostasis & original description: none


Gene families : OG0004039 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004039_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g50740
Cluster HCCA: Cluster_200

Target Alias Description ECC score Gene Family Method Actions
Aop_g11762 No alias regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
Cba_g31408 No alias regulatory protein of RNA homeostasis & original... 0.04 OrthoFinder output from all 47 species
Ceric.01G076400.1 Ceric.01G076400 regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Msp_g02780 No alias regulatory protein of RNA homeostasis & original... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0004659 prenyltransferase activity IEP HCCA
MF GO:0005338 nucleotide-sugar transmembrane transporter activity IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEP HCCA
MF GO:0008318 protein prenyltransferase activity IEP HCCA
MF GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity IEP HCCA
BP GO:0015780 nucleotide-sugar transmembrane transport IEP HCCA
BP GO:0015931 nucleobase-containing compound transport IEP HCCA
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
BP GO:0018342 protein prenylation IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
BP GO:0090481 pyrimidine nucleotide-sugar transmembrane transport IEP HCCA
BP GO:0097354 prenylation IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901264 carbohydrate derivative transport IEP HCCA
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR032378 ZC3H15/TMA46_C 226 307
No external refs found!