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  5. Spa_g50317

Spa_g50317


Description : not classified & original description: none


Gene families : OG0000599 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000599_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g50317

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00033p00020480 evm_27.TU.AmTr_v1... E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AMTR_s00148p00068590 evm_27.TU.AmTr_v1... E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
AT5G49665 No alias Zinc finger (C3HC4-type RING finger) family protein 0.03 OrthoFinder output from all 47 species
Adi_g021972 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene22775.t1 Aspi01Gene22775 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene46085.t1 Aspi01Gene46085 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.09G060200.1 Ceric.09G060200 not classified & original description: pacid=50588484... 0.05 OrthoFinder output from all 47 species
Dac_g23044 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_04078 No alias E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os08g03270.1 LOC_Os08g03270 E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os10g32760.1 LOC_Os10g32760 Probable E3 ubiquitin-protein ligase WAVH2... 0.02 OrthoFinder output from all 47 species
Len_g21346 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_11225g0010 No alias E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
MA_218345g0010 No alias E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Mp6g08600.1 No alias E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Ppi_g17464 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g10599 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e000344_P001 Zm00001e000344 E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Zm00001e004620_P001 Zm00001e004620 E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Zm00001e004621_P001 Zm00001e004621 E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Zm00001e010994_P001 Zm00001e010994 E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Zm00001e015127_P001 Zm00001e015127 E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
InterPro domains Description Start Stop
IPR032838 Vwaint_dom 677 747
IPR002035 VWF_A 316 505
IPR001841 Znf_RING 107 136
No external refs found!