Zm00001d046971 (GRMZM2G110408)


Aliases : GRMZM2G110408

Description : 29.5.7 protein.degradation.metalloprotease Metalloprotease that functions in thylakoid membrane biogenesis. Involved in the repair of PSII following damaged incurred during photoinhibition. Forms a complex with VAR1. Mutants show a variegated phenotype, which decreases during development. Transcript and protein levels increase with light intensity. VARIEGATED 2 (VAR2)


Gene families : OG_01_0000396 (Gene family) Phylogenetic Tree(s): OG0000396_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Zm00001d046971
Cluster HCCA cluster: Cluster_246

Target Alias Description ECC score Gene Family Method Actions
AT1G50250 FTSH1 FTSH protease 1 0.08 Gene family
AT5G42270 FTSH5, VAR1 FtsH extracellular protease family 0.06 Gene family
AT5G58870 ftsh9 FTSH protease 9 0.07 Gene family
Cpa|evm.model.tig00000704.23 No alias 29.5.7 protein.degradation.metalloprotease encodes an... 0.02 Gene family
Cpa|evm.model.tig00021127.121 No alias 29.5.7 protein.degradation.metalloprotease VAR1 0.03 Gene family
Cre09.g393950 No alias 31.2 cell.division cell division protein ftsH, putative 0.07 Gene family
Cre12.g485800 No alias 29.5.7 protein.degradation.metalloprotease VAR1 0.08 Gene family
Cre17.g720050 No alias 29.5.7 protein.degradation.metalloprotease encodes a... 0.09 Gene family
GSVIVT01008686001 No alias 29.5.7 protein.degradation.metalloprotease encodes an... 0.09 Gene family
GSVIVT01020760001 No alias 29.5.7 protein.degradation.metalloprotease... 0.07 Gene family
LOC_Os02g43350 Os02g0649700 29.5.7 protein.degradation.metalloprotease encodes an... 0.05 Gene family
LOC_Os06g45820 Os06g0669400 29.5.7 protein.degradation.metalloprotease... 0.15 Gene family
LOC_Os06g51029 Os06g0725900 29.5.7 protein.degradation.metalloprotease encodes an... 0.17 Gene family
Smo139726 PACid_15405752 No description available 0.03 Gene family
Smo149856 PACid_15413955 No description available 0.04 Gene family
Smo152929 PACid_15423479 No description available 0.03 Gene family
Solyc04g082250.3.1 Solyc04g082250.3 29.5.7 protein.degradation.metalloprotease VAR1 0.04 Gene family
Solyc07g055320.3.1 Solyc07g055320.3 29.5.7 protein.degradation.metalloprotease... 0.05 Gene family

Type GO Term Name Evidence Source
MF GO:0004222 metalloendopeptidase activity IEA InterProScan
MF GO:0005524 ATP binding IEA InterProScan
BP GO:0006508 proteolysis IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000642 Peptidase_M41 247 436
No external refs found!