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  5. Spa_g47786

Spa_g47786 (HSS, ARF1-BP, ARF2, ORE14)


Aliases : HSS, ARF1-BP, ARF2, ORE14

Description : ARF-type transcription factor & original description: none


Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g47786

Target Alias Description ECC score Gene Family Method Actions
AT1G34390 ARF22 auxin response factor 22 0.03 OrthoFinder output from all 47 species
AT5G60450 ARF4 auxin response factor 4 0.02 OrthoFinder output from all 47 species
Als_g32730 TIR5, MSG1,... ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g12632 ARF16 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene61150.t1 ARF16, Aspi01Gene61150 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0006.g010141 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: CDS=1-2961 0.03 OrthoFinder output from all 47 species
Azfi_s0065.g035933 ARF6 not classified & original description: CDS=1-678 0.02 OrthoFinder output from all 47 species
Dac_g07132 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g11626 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g01740 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os10g33940.1 ARF16, LOC_Os10g33940 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
LOC_Os12g41950.1 ARF6, LOC_Os12g41950 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Len_g17368 ARF6 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Len_g47059 ARF6 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g13395 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g41869 ARF17 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0019.g007919 ARF19, IAA22, ARF11 ARF-type transcription factor & original description: CDS=1-3501 0.03 OrthoFinder output from all 47 species
Smo438333 TIR5, MSG1,... Auxin response factor 11 OS=Oryza sativa subsp. indica 0.03 OrthoFinder output from all 47 species
Solyc10g086130.3.1 ARF16, Solyc10g086130 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Spa_g12615 ARF16 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g29541 ARF16 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e012670_P001 ARF16, Zm00001e012670 transcription factor (ARF) 0.04 OrthoFinder output from all 47 species
Zm00001e013061_P001 ARF16, Zm00001e013061 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006631 fatty acid metabolic process IEP HCCA
BP GO:0006633 fatty acid biosynthetic process IEP HCCA
BP GO:0072330 monocarboxylic acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR010525 ARF_dom 274 356
IPR003340 B3_DNA-bd 148 249
IPR033389 AUX/IAA_dom 761 798
IPR033389 AUX/IAA_dom 704 749
No external refs found!