Spa_g47096 (DEL1, E2FE, E2L3)

Aliases : DEL1, E2FE, E2L3

Description : E2F-type transcription factor & original description: none

Gene families : OG0004589 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004589_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Spa_g47096
Cluster	HCCA: Cluster_146

Target	Alias	Description	ECC score	Gene Family Method
AT3G01330	E2FF, DEL3, E2L2	DP-E2F-like protein 3	0.04	OrthoFinder output from all 47 species
AT3G48160	DEL1, E2FE, E2L3	DP-E2F-like 1	0.07	OrthoFinder output from all 47 species
Ala_g28562	DEL1, E2FE, E2L3	E2F-type transcription factor & original description: none	0.09	OrthoFinder output from all 47 species
Als_g46504	DEL1, E2FE, E2L3	cell cycle interphase transcription factor *(DEL) &...	0.07	OrthoFinder output from all 47 species
Als_g49953	DEL1, E2FE, E2L3	E2F-type transcription factor & original description: none	0.08	OrthoFinder output from all 47 species
Aop_g14228	DEL1, E2FE, E2L3	E2F-type transcription factor & original description: none	0.16	OrthoFinder output from all 47 species
Aspi01Gene47792.t1	DEL1, E2FE,...	E2F-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Aspi01Gene47792.t2	DEL1, E2FE,...	E2F-type transcription factor & original description: none	0.07	OrthoFinder output from all 47 species
Azfi_s0002.g001154	DEL1, E2FE, E2L3	E2F-type transcription factor & original description:...	0.09	OrthoFinder output from all 47 species
Ceric.11G046800.1	DEL1, E2FE,...	E2F-type transcription factor & original description:...	0.08	OrthoFinder output from all 47 species
Ceric.22G042300.1	DEL1, E2FE,...	E2F-type transcription factor & original description:...	0.17	OrthoFinder output from all 47 species
Dcu_g06912	DEL1, E2FE, E2L3	E2F-type transcription factor & original description: none	0.14	OrthoFinder output from all 47 species
GSVIVT01007832001	DEL1, E2FE, E2L3	RNA processing.organelle machineries.RNA...	0.03	OrthoFinder output from all 47 species
Gb_38482	DEL1, E2FE, E2L3	DEL cell cycle interphase transcription factor....	0.12	OrthoFinder output from all 47 species
LOC_Os02g50630.1	DEL1, E2FE,...	DEL cell cycle interphase transcription factor....	0.09	OrthoFinder output from all 47 species
LOC_Os06g13670.1	DEL1, E2FE,...	DEL cell cycle interphase transcription factor....	0.03	OrthoFinder output from all 47 species
Len_g58085	DEL1, E2FE, E2L3	E2F-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
MA_2814g0010	DEL1, E2FE, E2L3	DEL cell cycle interphase transcription factor....	0.04	OrthoFinder output from all 47 species
Mp3g20990.1	DEL1, E2FE, E2L3	DEL cell cycle interphase transcription factor....	0.07	OrthoFinder output from all 47 species
Msp_g15665	DEL1, E2FE, E2L3	E2F-type transcription factor & original description: none	0.19	OrthoFinder output from all 47 species
Nbi_g03052	DEL1, E2FE, E2L3	E2F-type transcription factor & original description: none	0.07	OrthoFinder output from all 47 species
Sacu_v1.1_s0063.g015720	DEL1, E2FE, E2L3	E2F-type transcription factor & original description: CDS=1-1722	0.1	OrthoFinder output from all 47 species
Sacu_v1.1_s0067.g016323	DEL1, E2FE, E2L3	E2F-type transcription factor & original description: CDS=99-1529	0.03	OrthoFinder output from all 47 species
Smo421405	DEL1, E2FE, E2L3	RNA biosynthesis.transcriptional activation.E2F/DP...	0.05	OrthoFinder output from all 47 species
Solyc02g087310.3.1	E2FF, DEL3,...	DEL cell cycle interphase transcription factor....	0.07	OrthoFinder output from all 47 species
Solyc03g113760.3.1	DEL1, E2FE,...	DEL cell cycle interphase transcription factor....	0.09	OrthoFinder output from all 47 species
Tin_g44467	DEL1, E2FE, E2L3	E2F-type transcription factor & original description: none	0.17	OrthoFinder output from all 47 species
Zm00001e030907_P001	DEL1, E2FE,...	DEL cell cycle interphase transcription factor....	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005667	transcription regulator complex	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000796	condensin complex	IEP	HCCA
MF	GO:0003674	molecular_function	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003682	chromatin binding	IEP	HCCA
MF	GO:0003887	DNA-directed DNA polymerase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006260	DNA replication	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0007076	mitotic chromosome condensation	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
BP	GO:0022402	cell cycle process	IEP	HCCA
BP	GO:0030261	chromosome condensation	IEP	HCCA
MF	GO:0034061	DNA polymerase activity	IEP	HCCA
BP	GO:0044260	cellular macromolecule metabolic process	IEP	HCCA
CC	GO:0044815	DNA packaging complex	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
MF	GO:0140658	ATP-dependent chromatin remodeler activity	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
BP	GO:1903047	mitotic cell cycle process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003316	E2F_WHTH_DNA-bd_dom	217	295
IPR003316	E2F_WHTH_DNA-bd_dom	45	109

External Links

No external refs found!

Spa_g47096 (DEL1, E2FE, E2L3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation