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  5. Spa_g46185

Spa_g46185


Description : pre-mRNA splicing factor *(SF1) & original description: none


Gene families : OG0000568 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000568_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g46185

Target Alias Description ECC score Gene Family Method Actions
Adi_g057109 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g058568 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.28G060200.1 Ceric.28G060200 pre-mRNA splicing factor *(SF1) & original description:... 0.03 OrthoFinder output from all 47 species
Ehy_g16716 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.02 OrthoFinder output from all 47 species
Len_g10453 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g29785 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g15402 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g25454 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g08596 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c20_6220V3.1 Pp3c20_6220 splicing factor-related 0.01 OrthoFinder output from all 47 species
Sam_g09720 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g18658 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g27159 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000504 RRM_dom 721 790
IPR004088 KH_dom_type_1 528 596
IPR001878 Znf_CCHC 668 684
IPR001878 Znf_CCHC 630 644
IPR032570 SF1-HH 403 509
No external refs found!