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  5. Spa_g43678

Spa_g43678


Description : bHLH-type transcription factor & original description: none


Gene families : OG0005877 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005877_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g43678
Cluster HCCA: Cluster_126

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00048p00183690 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.bHLH... 0.04 OrthoFinder output from all 47 species
AT1G06170 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.06 OrthoFinder output from all 47 species
AT2G31220 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.06 OrthoFinder output from all 47 species
Aop_g69486 No alias bHLH-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene69047.t1 Aspi01Gene69047 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.14G094900.1 Ceric.14G094900 bHLH-type transcription factor & original description:... 0.05 OrthoFinder output from all 47 species
Ceric.21G089700.1 Ceric.21G089700 bHLH-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Dcu_g42960 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g43850 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os01g18870.1 LOC_Os01g18870 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
LOC_Os04g51070.1 LOC_Os04g51070 transcription factor (bHLH) 0.01 OrthoFinder output from all 47 species
Len_g59537 No alias bHLH-type transcription factor & original description: none 0.08 OrthoFinder output from all 47 species
MA_1220g0010 No alias transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Nbi_g26295 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g30559 No alias bHLH-type transcription factor & original description: none 0.12 OrthoFinder output from all 47 species
Ore_g41320 No alias bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g43808 No alias bHLH-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g16733 No alias bHLH-type transcription factor & original description: none 0.11 OrthoFinder output from all 47 species
Sam_g05982 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g081090.2.1 Solyc01g081090 transcription factor (bHLH) 0.05 OrthoFinder output from all 47 species
Solyc01g081100.3.1 Solyc01g081100 transcription factor (bHLH) 0.08 OrthoFinder output from all 47 species
Spa_g12971 No alias bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e025435_P001 Zm00001e025435 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0017025 TBP-class protein binding IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0042393 histone binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140296 general transcription initiation factor binding IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR011598 bHLH_dom 315 361
No external refs found!