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  5. Spa_g42220

Spa_g42220


Description : not classified & original description: none


Gene families : OG0000231 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000231_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g42220
Cluster HCCA: Cluster_146

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00172530 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
Als_g07887 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g33083 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene60447.t1 Aspi01Gene60447 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene60448.t1 Aspi01Gene60448 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dac_g23562 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g18271 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Mp8g00500.1 No alias no description available(sp|q65xs5|bc10_orysj : 112.0) 0.03 OrthoFinder output from all 47 species
Ore_g38028 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e003261_P001 Zm00001e003261 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e024826_P001 Zm00001e024826 no description available(sp|q65xs5|bc10_orysj : 127.0) 0.03 OrthoFinder output from all 47 species
Zm00001e026725_P003 Zm00001e026725 no description available(sp|q65xs5|bc10_orysj : 579.0) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA Interproscan
MF GO:0016757 glycosyltransferase activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008649 rRNA methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016436 rRNA (uridine) methyltransferase activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP HCCA
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
BP GO:0031167 rRNA methylation IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0051213 dioxygenase activity IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
MF GO:0070042 rRNA (uridine-N3-)-methyltransferase activity IEP HCCA
BP GO:0070475 rRNA base methylation IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140102 catalytic activity, acting on a rRNA IEP HCCA
InterPro domains Description Start Stop
IPR003406 Glyco_trans_14 162 399
No external refs found!