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  5. Pp3c16_6070V3.1

Pp3c16_6070V3.1


Description : DNA-directed RNA polymerase family protein


Gene families : OG_01_0007163 (Archaeplastida) Phylogenetic Tree(s): OG_01_0007163_tree ,
OG_02_0005143 (LandPlants) Phylogenetic Tree(s): OG_02_0005143_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c16_6070V3.1
Cluster HCCA: Cluster_217

Target Alias Description ECC score Gene Family Method Actions
Pp3c17_12270V3.1 No alias DNA-directed RNA polymerase family protein 0.05 Archaeplastida
Pp3c20_3310V3.1 No alias No annotation 0.04 Archaeplastida
Pp3c21_8540V3.1 No alias nuclear RNA polymerase C2 0.06 Archaeplastida
Pp3c3_35890V3.1 No alias DNA-directed RNA polymerase family protein 0.04 Archaeplastida
Pp3c3_37780V3.1 No alias DNA-directed RNA polymerase family protein 0.03 Archaeplastida
Pp3c4_14800V3.1 No alias DNA-directed RNA polymerase family protein 0.02 Archaeplastida
Pp3c5_1420V3.1 No alias nuclear RNA polymerase C2 0.03 Archaeplastida
Pp3c5_18580V3.1 No alias nuclear RNA polymerase A2 0.04 Archaeplastida
Pp3s67_170V3.1 No alias DNA-directed RNA polymerase family protein 0.03 Archaeplastida
Pp3c17_12270V3.1 No alias DNA-directed RNA polymerase family protein 0.05 LandPlants
Pp3c20_3310V3.1 No alias No annotation 0.04 LandPlants
Pp3c21_8540V3.1 No alias nuclear RNA polymerase C2 0.06 LandPlants
Pp3c24_8970V3.1 No alias DNA-directed RNA polymerase family protein 0.02 LandPlants
Pp3c3_35890V3.1 No alias DNA-directed RNA polymerase family protein 0.04 LandPlants
Pp3c3_37780V3.1 No alias DNA-directed RNA polymerase family protein 0.03 LandPlants
Pp3c4_14800V3.1 No alias DNA-directed RNA polymerase family protein 0.02 LandPlants
Pp3c5_1420V3.1 No alias nuclear RNA polymerase C2 0.05 LandPlants
Pp3c5_18580V3.1 No alias nuclear RNA polymerase A2 0.05 LandPlants
Pp3s67_170V3.1 No alias DNA-directed RNA polymerase family protein 0.03 LandPlants

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR007645 RNA_pol_Rpb2_3 229 256
IPR007120 DNA-dir_RNAP_su2_dom 324 634
IPR007641 RNA_pol_Rpb2_7 636 718
No external refs found!