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  5. Spa_g41402

Spa_g41402 (PUM1, APUM1)


Aliases : PUM1, APUM1

Description : not classified & original description: none


Gene families : OG0000583 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000583_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g41402

Target Alias Description ECC score Gene Family Method Actions
Adi_g011593 PUM1, APUM1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g16848 PUM1, APUM1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g48916 APUM2, PUM2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g15647 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006284 base-excision repair IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP HCCA
MF GO:0019104 DNA N-glycosylase activity IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0043167 ion binding IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR012940 NABP 368 756
IPR001313 Pumilio_RNA-bd_rpt 874 901
IPR001313 Pumilio_RNA-bd_rpt 979 1013
IPR001313 Pumilio_RNA-bd_rpt 800 827
IPR001313 Pumilio_RNA-bd_rpt 945 976
IPR001313 Pumilio_RNA-bd_rpt 762 796
IPR001313 Pumilio_RNA-bd_rpt 1025 1054
IPR001313 Pumilio_RNA-bd_rpt 834 867
IPR001313 Pumilio_RNA-bd_rpt 906 941
No external refs found!