1. Home
  2. Species
  3. Stenochlaena palustris
  4. Sequence
  5. Spa_g41215

Spa_g41215


Description : GTPase effector *(BDR) & original description: none


Gene families : OG0000666 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000666_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g41215
Cluster HCCA: Cluster_183

Target Alias Description ECC score Gene Family Method Actions
AT1G75160 No alias Protein of unknown function (DUF620) 0.03 OrthoFinder output from all 47 species
AT5G06610 No alias Protein of unknown function (DUF620) 0.03 OrthoFinder output from all 47 species
Aev_g11944 No alias GTPase effector *(BDR) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g03158 No alias GTPase effector *(BDR) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g14261 No alias GTPase effector *(BDR) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g09619 No alias GTPase effector *(BDR) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene61705.t1 Aspi01Gene61705 GTPase effector *(BDR) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0031.g024486 No alias GTPase effector *(BDR) & original description: CDS=183-1394 0.03 OrthoFinder output from all 47 species
Azfi_s0050.g031036 No alias GTPase effector *(BDR) & original description: CDS=812-1645 0.05 OrthoFinder output from all 47 species
Cba_g17398 No alias GTPase effector *(BDR) & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g02175 No alias GTPase effector *(BDR) & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g02214 No alias GTPase effector *(BDR) & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g39476 No alias GTPase effector *(BDR) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01009382001 No alias No description available 0.03 OrthoFinder output from all 47 species
GSVIVT01033432001 No alias Chromatin organisation.histone modifications.histone... 0.03 OrthoFinder output from all 47 species
LOC_Os01g55795.1 LOC_Os01g55795 GTPase effector (BDR) 0.02 OrthoFinder output from all 47 species
Lfl_g04065 No alias GTPase effector *(BDR) & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g29419 No alias GTPase effector *(BDR) & original description: none 0.03 OrthoFinder output from all 47 species
MA_21627g0010 No alias GTPase effector (BDR) 0.03 OrthoFinder output from all 47 species
Nbi_g13326 No alias GTPase effector *(BDR) & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0167.g024239 No alias GTPase effector *(BDR) & original description: CDS=316-1776 0.02 OrthoFinder output from all 47 species
Sam_g11658 No alias GTPase effector *(BDR) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g11659 No alias GTPase effector *(BDR) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g19310 No alias GTPase effector *(BDR) & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g19311 No alias GTPase effector *(BDR) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g107350.3.1 Solyc01g107350 GTPase effector (BDR) 0.03 OrthoFinder output from all 47 species
Spa_g47866 No alias GTPase effector *(BDR) & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e035436_P001 Zm00001e035436 GTPase effector (BDR) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006631 fatty acid metabolic process IEP HCCA
BP GO:0006633 fatty acid biosynthetic process IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0016790 thiolester hydrolase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030976 thiamine pyrophosphate binding IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
MF GO:0050997 quaternary ammonium group binding IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0072330 monocarboxylic acid biosynthetic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
MF GO:1901681 sulfur compound binding IEP HCCA
InterPro domains Description Start Stop
IPR006873 DUF620 118 357
No external refs found!