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  5. Spa_g40446

Spa_g40446


Description : plant-specific E3 ubiquitin ligase *(RSL/RFA) & original description: none


Gene families : OG0000695 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000695_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g40446
Cluster HCCA: Cluster_68

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00129p00115880 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
AT3G43750 No alias RING/U-box protein with C6HC-type zinc finger domain 0.03 OrthoFinder output from all 47 species
Als_g14367 No alias plant-specific E3 ubiquitin ligase *(RSL/RFA) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01038498001 No alias No description available 0.06 OrthoFinder output from all 47 species
LOC_Os09g11170.1 LOC_Os09g11170 plant-specific E3 ubiquitin ligase (RSL/RFA) 0.03 OrthoFinder output from all 47 species
LOC_Os09g26470.1 LOC_Os09g26470 plant-specific E3 ubiquitin ligase (RSL/RFA) 0.01 OrthoFinder output from all 47 species
Len_g22810 No alias plant-specific E3 ubiquitin ligase *(RSL/RFA) & original... 0.04 OrthoFinder output from all 47 species
MA_132042g0010 No alias plant-specific E3 ubiquitin ligase (RSL/RFA) 0.02 OrthoFinder output from all 47 species
MA_44078g0010 No alias plant-specific E3 ubiquitin ligase (RSL/RFA) 0.04 OrthoFinder output from all 47 species
MA_6751482g0010 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Pnu_g06303 No alias plant-specific E3 ubiquitin ligase *(RSL/RFA) & original... 0.03 OrthoFinder output from all 47 species
Smo415256 No alias No description available 0.03 OrthoFinder output from all 47 species
Solyc03g117860.3.1 Solyc03g117860 plant-specific E3 ubiquitin ligase (RSL/RFA) 0.04 OrthoFinder output from all 47 species
Tin_g09748 No alias plant-specific E3 ubiquiTin ligase *(RSL/RFA) & original... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002867 IBR_dom 195 244
IPR002867 IBR_dom 265 313
No external refs found!