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  5. Spa_g39488

Spa_g39488


Description : not classified & original description: none


Gene families : OG0001047 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001047_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g39488

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00099p00056810 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
AT1G33680 No alias KH domain-containing protein 0.03 OrthoFinder output from all 47 species
AT4G10070 No alias KH domain-containing protein 0.02 OrthoFinder output from all 47 species
Adi_g014211 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g077319 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g105498 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g12253 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g20615 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g13995 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g29246 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g08425 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g02902 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene21826.t1 Aspi01Gene21826 virus infection resistance factor *(BTR1) & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene69176.t1 Aspi01Gene69176 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g72516 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g72682 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.20G036400.1 Ceric.20G036400 not classified & original description: pacid=50567078... 0.03 OrthoFinder output from all 47 species
Cre06.g250800 No alias No description available 0.03 OrthoFinder output from all 47 species
Dcu_g11627 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g11741 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dde_g10230 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01036378001 No alias No description available 0.03 OrthoFinder output from all 47 species
Gb_04922 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Gb_17340 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os02g13130.1 LOC_Os02g13130 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os08g01930.1 LOC_Os08g01930 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Len_g24459 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g10191 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Mp3g07780.1 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Msp_g20268 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g42189 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g17404 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g49685 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g63768 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Solyc11g040370.2.1 Solyc11g040370 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Solyc12g095960.3.1 Solyc12g095960 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR004088 KH_dom_type_1 377 441
IPR004088 KH_dom_type_1 279 344
No external refs found!