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  5. Spa_g39486

Spa_g39486


Description : not classified & original description: none


Gene families : OG0012792 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0012792_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g39486
Cluster HCCA: Cluster_191

Target Alias Description ECC score Gene Family Method Actions
Als_g05092 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g13378 VAC1, ECB2, ATECB2 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ceric.03G005000.1 VAC1, ECB2,... not classified & original description: pacid=50573189... 0.02 OrthoFinder output from all 47 species
Pir_g12974 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 587 618
IPR002885 Pentatricopeptide_repeat 361 386
IPR002885 Pentatricopeptide_repeat 389 419
IPR002885 Pentatricopeptide_repeat 522 566
IPR002885 Pentatricopeptide_repeat 286 333
IPR002885 Pentatricopeptide_repeat 184 231
IPR002885 Pentatricopeptide_repeat 83 132
No external refs found!