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  5. Spa_g39010

Spa_g39010


Description : not classified & original description: none


Gene families : OG0000748 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000748_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g39010
Cluster HCCA: Cluster_91

MA_59443g0010 details <tr> <td><a href="/sequence/view/1515804" class="qtip_tooltip qtip_dynamic_tooltip" qtip_href="/sequence/tooltip/1515804">Mp3g10030.1</a></td> <td><span class="text-muted">No alias</span></td> <td>Glycine-rich domain-containing protein 2 OS=Arabidopsis...</td> <td>0.02</td> <td>OrthoFinder output from all 47 species</td> <td><a href="/ecc/graph_pair/39477879" data-toggle="tooltip" data-placement="top" title="View ECC pair as graph"><i class="fa fa-eye"></i></a> <a href="/ecc/graph/2083755/92/21" data-toggle="tooltip" data-placement="top" title="View ECC as graph"><i class="fa fa-sitemap"></i></a></td> </tr> <tr> <td><a href="/sequence/view/1517833" class="qtip_tooltip qtip_dynamic_tooltip" qtip_href="/sequence/tooltip/1517833">Mp4g04810.1</a></td> <td><span class="text-muted">No alias</span></td> <td>Glycine-rich domain-containing protein 1 OS=Arabidopsis...</td> <td>0.04</td> <td>OrthoFinder output from all 47 species</td> <td><a href="/ecc/graph_pair/39477901" data-toggle="tooltip" data-placement="top" title="View ECC pair as graph"><i class="fa fa-eye"></i></a> <a href="/ecc/graph/2083755/92/21" data-toggle="tooltip" data-placement="top" title="View ECC as graph"><i class="fa fa-sitemap"></i></a></td> </tr> <tr> <td><a href="/sequence/view/949745" class="qtip_tooltip qtip_dynamic_tooltip" qtip_href="/sequence/tooltip/949745">Sam_g51501</a></td> <td><span class="text-muted">No alias</span></td> <td>not classified & original description: none</td> <td>0.02</td> <td>OrthoFinder output from all 47 species</td> <td><a href="/ecc/graph_pair/39478071" data-toggle="tooltip" data-placement="top" title="View ECC pair as graph"><i class="fa fa-eye"></i></a> <a href="/ecc/graph/2083755/92/21" data-toggle="tooltip" data-placement="top" title="View ECC as graph"><i class="fa fa-sitemap"></i></a></td> </tr> </tbody> </table> </div> <br> <h3 class="banner-blue" id="annotation">Functional Annotation</h3> <div class="panel with-nav-tabs panel-default"> <div class="panel-heading"> <ul class="nav nav-tabs"> <li class="active"><a href="#tab1default" data-toggle="tab">GO</a></li> <li><a href="#tab2default" data-toggle="tab">Predicted GO</a></li> <li><a href="#tab3default" data-toggle="tab">InterPro</a></li> </ul> </div> <div> <div class="tab-content"> <div class="tab-pane fade in active" id="tab1default"> <div class="table-responsive"> <table class="table table-striped table-fixed" id="go_table"> <thead> <tr> <th class="col-xs-1" data-sort="string-ins"><span class="sort-icon"></span>Type</th> <th class="col-xs-2" data-sort="string-ins"><span class="sort-icon"></span><abbr title="Click to show help" href="/help/go" data-target="#helpModal">GO</abbr> Term</th> <th class="col-xs-6" data-sort="string-ins"><span class="sort-icon"></span>Name</th> <th class="col-xs-1" data-sort="string-ins"><span class="sort-icon"></span>Evidence</th> <th class="col-xs-2" data-sort="string-ins"><span class="sort-icon"></span>Source</th> </tr> </thead> <tbody> <tr> <td class="col-xs-12"><p>No GO annotation available for this sequence</p></td> </tr> </tbody> </table> </div> <div class="panel-body"> <a href="#" id="go_toggle">Toggle parental</a> </div> </div> <div class="tab-pane fade" id="tab2default"> <div class="table-responsive"> <table class="table table-striped table-fixed" id="predicted_go_table"> <thead> <tr> <th class="col-xs-1" data-sort="string-ins"><span class="sort-icon"></span>Type</th> <th class="col-xs-2" data-sort="string-ins"><span class="sort-icon"></span><abbr title="Click to show help" href="/help/go" data-target="#helpModal">GO</abbr> Term</th> <th class="col-xs-6" data-sort="string-ins"><span class="sort-icon"></span>Name</th> <th class="col-xs-1" data-sort="string-ins"><span class="sort-icon"></span>Evidence</th> <th class="col-xs-2" data-sort="string-ins"><span class="sort-icon"></span>Source</th> </tr> </thead> <tbody> <tr> <td class="col-xs-12"><p>No Predicted GO terms available for this sequence</p></td> </tr> </tbody> </table> </div> </div> <div class="tab-pane fade" id="tab3default"> <div class="table-responsive"> <table class="table table-striped table-fixed" id="interpro_table"> <thead> <tr> <th class="col-xs-3" data-sort="string-ins"><span class="sort-icon"></span><abbr title="Click to show help" href="/help/interpro_domain" data-target="#helpModal">InterPro domains</abbr></th> <th class="col-xs-5" data-sort="string-ins"><span class="sort-icon"></span>Description</th> <th class="col-xs-2" data-sort="int"><span class="sort-icon"></span>Start</th> <th class="col-xs-2" data-sort="int"><span class="sort-icon"></span>Stop</th> </tr> </thead> <tbody> <tr> <td class="col-xs-3"><a href="/interpro/view/8419">IPR009836</a></td> <td class="col-xs-5">GRDP-like</td> <td class="col-xs-2">103</td> <td class="col-xs-2">248</td> </tr> <tr> <td class="col-xs-3"><a href="/interpro/view/8419">IPR009836</a></td> <td class="col-xs-5">GRDP-like</td> <td class="col-xs-2">17</td> <td class="col-xs-2">104</td> </tr> 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Target Alias Description ECC score Gene Family Method Actions
Aev_g11685 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000498.10 No alias Glycine-rich domain-containing protein 2 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Gb_25938 No alias Glycine-rich domain-containing protein 1 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
LOC_Os11g40590.3 LOC_Os11g40590 Glycine-rich domain-containing protein 2 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Len_g04825 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species