Spa_g38613 (PRP39)

Aliases : PRP39

Description : pre-mRNA-processing protein *(PRP39) & original description: none

Gene families : OG0002297 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002297_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Spa_g38613
Cluster	HCCA: Cluster_144

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00179p00033790	AT PRP39-2,...	No description available	0.05	OrthoFinder output from all 47 species
AT1G04080	PRP39	Tetratricopeptide repeat (TPR)-like superfamily protein	0.03	OrthoFinder output from all 47 species
Adi_g018948	PRP39	pre-mRNA-processing protein *(PRP39) & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g019406	PRP39	pre-mRNA-processing protein *(PRP39) & original description: none	0.02	OrthoFinder output from all 47 species
Als_g12647	PRP39	pre-mRNA-processing protein *(PRP39) & original description: none	0.08	OrthoFinder output from all 47 species
Aop_g37742	PRP39	pre-mRNA-processing protein *(PRP39) & original description: none	0.04	OrthoFinder output from all 47 species
Cba_g25483	PRP39	pre-mRNA-processing protein *(PRP39) & original description: none	0.06	OrthoFinder output from all 47 species
Ceric.04G096600.1	PRP39, Ceric.04G096600	pre-mRNA-processing protein *(PRP39) & original...	0.05	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020911.47	PRP39	No description available	0.01	OrthoFinder output from all 47 species
Cre16.g670300	PRP39	No description available	0.01	OrthoFinder output from all 47 species
Dcu_g15145	PRP39	pre-mRNA-processing protein *(PRP39) & original description: none	0.09	OrthoFinder output from all 47 species
Dde_g11777	PRP39	pre-mRNA-processing protein *(PRP39) & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g09806	PRP39	pre-mRNA-processing protein *(PRP39) & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01028423001	PRP39	No description available	0.04	OrthoFinder output from all 47 species
Gb_23802	PRP39	pre-mRNA-processing protein (PRP39)	0.03	OrthoFinder output from all 47 species
LOC_Os03g11200.1	PRP39, LOC_Os03g11200	pre-mRNA-processing protein (PRP39)	0.04	OrthoFinder output from all 47 species
Len_g23571	PRP39	pre-mRNA-processing protein *(PRP39) & original description: none	0.08	OrthoFinder output from all 47 species
Lfl_g19659	PRP39	pre-mRNA-processing protein *(PRP39) & original description: none	0.08	OrthoFinder output from all 47 species
Mp6g00560.1	PRP39	pre-mRNA-processing protein (PRP39)	0.02	OrthoFinder output from all 47 species
Msp_g38712	PRP39	pre-mRNA-processing protein *(PRP39) & original description: none	0.05	OrthoFinder output from all 47 species
Pnu_g06717	AT PRP39-2, PRP39-2	pre-mRNA-processing protein *(PRP39) & original description: none	0.05	OrthoFinder output from all 47 species
Ppi_g21848	PRP39	pre-mRNA-processing protein *(PRP39) & original description: none	0.06	OrthoFinder output from all 47 species
Ppi_g29159	PRP39	pre-mRNA-processing protein *(PRP39) & original description: none	0.07	OrthoFinder output from all 47 species
Sacu_v1.1_s0003.g001814	PRP39	pre-mRNA-processing protein *(PRP39) & original...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005318	PRP39	pre-mRNA-processing protein *(PRP39) & original...	0.03	OrthoFinder output from all 47 species
Sam_g11835	No alias	pre-mRNA-processing protein *(PRP39) & original description: none	0.03	OrthoFinder output from all 47 species
Smo109541	PRP39	Cleavage stimulation factor subunit 77 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
Tin_g19871	PRP39	pre-mRNA-processing protein *(PRP39) & original description: none	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR008847	Suf	145	312

External Links

No external refs found!

Spa_g38613 (PRP39)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation