AMTR_s00099p00041040 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00099.28

Description : Putative pentatricopeptide repeat-containing protein At1g31840 OS=Arabidopsis thaliana


Gene families : OG_01_0017567 (Archaeplastida) Phylogenetic Tree(s): OG_01_0017567_tree ,
OG_02_0017330 (LandPlants) Phylogenetic Tree(s): OG_02_0017330_tree ,
OG_03_0016847 (SeedPlants) Phylogenetic Tree(s): OG_03_0016847_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00099p00041040
Cluster HCCA: Cluster_168

Target Alias Description ECC score Gene Family Method Actions
Gb_23453 No alias Putative pentatricopeptide repeat-containing protein... 0.07 Archaeplastida
Gb_23453 No alias Putative pentatricopeptide repeat-containing protein... 0.06 LandPlants
Gb_23453 No alias Putative pentatricopeptide repeat-containing protein... 0.05 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 594 626
IPR002885 Pentatricopeptide_repeat 699 729
IPR002885 Pentatricopeptide_repeat 738 787
IPR002885 Pentatricopeptide_repeat 808 857
IPR002885 Pentatricopeptide_repeat 213 261
IPR002885 Pentatricopeptide_repeat 878 925
IPR002885 Pentatricopeptide_repeat 633 682
IPR002885 Pentatricopeptide_repeat 528 577
IPR002885 Pentatricopeptide_repeat 388 436
IPR002885 Pentatricopeptide_repeat 458 507
IPR002885 Pentatricopeptide_repeat 154 176
IPR002885 Pentatricopeptide_repeat 289 315
IPR002885 Pentatricopeptide_repeat 326 351
IPR002885 Pentatricopeptide_repeat 356 385
No external refs found!