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  5. Spa_g30642

Spa_g30642 (CHB3, ATSWI3D)


Aliases : CHB3, ATSWI3D

Description : SMARCC component *(SWI3) of chromatin remodeling complex & original description: none


Gene families : OG0000817 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000817_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g30642

Target Alias Description ECC score Gene Family Method Actions
AT1G21700 CHB4, SWI3C, ATSWI3C SWITCH/sucrose nonfermenting 3C 0.03 OrthoFinder output from all 47 species
AT4G34430 CHB3, ATSWI3D DNA-binding family protein 0.03 OrthoFinder output from all 47 species
Adi_g055176 SWI3A, CHB1, ATSWI3A SMARCC component *(SWI3) of chromatin remodeling complex... 0.03 OrthoFinder output from all 47 species
Ala_g15211 CHB4, SWI3C, ATSWI3C SMARCC component *(SWI3) of chromatin remodeling complex... 0.04 OrthoFinder output from all 47 species
Aop_g08555 CHB4, SWI3C, ATSWI3C SMARCC component *(SWI3) of chromatin remodeling complex... 0.06 OrthoFinder output from all 47 species
Ceric.18G048000.1 SWI3A, CHB1,... SMARCC component *(SWI3) of chromatin remodeling complex... 0.03 OrthoFinder output from all 47 species
Ceric.22G071000.1 CHB3, ATSWI3D,... SMARCC component *(SWI3) of chromatin remodeling complex... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000388.52 CHB4, SWI3C, ATSWI3C Chromatin organisation.chromatin remodeling... 0.01 OrthoFinder output from all 47 species
Dac_g10520 CHB3, ATSWI3D SMARCC component *(SWI3) of chromatin remodeling complex... 0.05 OrthoFinder output from all 47 species
Dac_g11402 CHB4, SWI3C, ATSWI3C SMARCC component *(SWI3) of chromatin remodeling complex... 0.02 OrthoFinder output from all 47 species
Ehy_g12222 SWI3A, CHB1, ATSWI3A SMARCC component *(SWI3) of chromatin remodeling complex... 0.02 OrthoFinder output from all 47 species
Mp8g15610.1 SWI3A, CHB1, ATSWI3A component BAF255/170 of chromatin remodeling complex 0.02 OrthoFinder output from all 47 species
Pir_g01373 CHB3, ATSWI3D SMARCC component *(SWI3) of chromatin remodeling complex... 0.05 OrthoFinder output from all 47 species
Solyc01g109510.3.1 CHB3, ATSWI3D,... component BAF255/170 of chromatin remodeling complex 0.03 OrthoFinder output from all 47 species
Solyc06g060120.3.1 CHB4, SWI3C,... component BAF255/170 of chromatin remodeling complex 0.04 OrthoFinder output from all 47 species
Tin_g21307 CHB4, SWI3C, ATSWI3C SMARCC component *(SWI3) of chromaTin remodeling complex... 0.05 OrthoFinder output from all 47 species
Zm00001e007799_P001 SWI3A, CHB1,... component BAF255/170 of chromatin remodeling complex 0.03 OrthoFinder output from all 47 species
Zm00001e012143_P002 CHB3, ATSWI3D,... component BAF255/170 of chromatin remodeling complex 0.03 OrthoFinder output from all 47 species
Zm00001e024548_P001 CHB4, SWI3C,... component BAF255/170 of chromatin remodeling complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
CC GO:0031011 Ino80 complex IEP HCCA
CC GO:0070603 SWI/SNF superfamily-type complex IEP HCCA
CC GO:0097346 INO80-type complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1904949 ATPase complex IEP HCCA
InterPro domains Description Start Stop
IPR032451 SMARCC_C 634 709
IPR007526 SWIRM 130 218
IPR001005 SANT/Myb 352 394
IPR000433 Znf_ZZ 295 330
No external refs found!