1. Home
  2. Species
  3. Stenochlaena palustris
  4. Sequence
  5. Spa_g30174

Spa_g30174 (AGO1)


Aliases : AGO1

Description : not classified & original description: none


Gene families : OG0000157 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000157_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g30174

Target Alias Description ECC score Gene Family Method Actions
Adi_g013023 AGO1 regulatory protein *(AGO7) of transacting siRNA pathway... 0.03 OrthoFinder output from all 47 species
Adi_g049547 AGO1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g061052 AGO1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g110306 AGO1 regulatory protein *(AGO7) of transacting siRNA pathway... 0.02 OrthoFinder output from all 47 species
Adi_g113326 AGO1 miRNA recruiting factor (AGO) of RNA-induced silencing... 0.03 OrthoFinder output from all 47 species
Aop_g10666 AGO1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene29036.t1 AGO4, OCP11,... siRNA-integrating factor *(AGO) & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene35126.t1 AGO1, Aspi01Gene35126 miRNA recruiting factor (AGO) of RNA-induced silencing... 0.04 OrthoFinder output from all 47 species
Aspi01Gene62001.t1 AGO3, Aspi01Gene62001 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene68579.t1 AGO1, Aspi01Gene68579 siRNA-binding factor *(AGO2) of non-canonical RdDM... 0.03 OrthoFinder output from all 47 species
Ceric.28G056900.1 AGO1, Ceric.28G056900 miRNA recruiting factor (AGO) of RNA-induced silencing... 0.03 OrthoFinder output from all 47 species
GSVIVT01001941001 AGO4, OCP11 Chromatin organisation.DNA methylation.canonical... 0.03 OrthoFinder output from all 47 species
MA_47087g0010 AGO4, OCP11 Protein argonaute 7 OS=Oryza sativa subsp. japonica... 0.03 OrthoFinder output from all 47 species
Zm00001e007233_P001 AGO1, Zm00001e007233 RIS-Complex miRNA recruiting factor (AGO1) 0.02 OrthoFinder output from all 47 species
Zm00001e011432_P001 AGO5, Zm00001e011432 Protein argonaute MEL1 OS=Oryza sativa subsp. japonica... 0.02 OrthoFinder output from all 47 species
Zm00001e016179_P001 PNH, AGO10, ZLL,... Protein argonaute MEL1 OS=Oryza sativa subsp. japonica... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0042393 histone binding IEP HCCA
InterPro domains Description Start Stop
IPR032472 ArgoL2 11 39
IPR003165 Piwi 148 414
IPR032473 Argonaute_Mid_dom 47 117
No external refs found!