Aev_g21965

Description : component *(SOP1) of PAXT RNA-exosome-activation complex & original description: none

Gene families : OG0004256 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004256_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aev_g21965

Target	Alias	Description	ECC score	Gene Family Method
Ala_g33279	No alias	component *(SOP1) of PAXT RNA-exosome-activation complex...	0.02	OrthoFinder output from all 47 species
Als_g09594	No alias	component *(SOP1) of PAXT RNA-exosome-activation complex...	0.02	OrthoFinder output from all 47 species
Aob_g26394	No alias	component *(SOP1) of PAXT RNA-exosome-activation complex...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000229.4	No alias	RNA processing.RNA decay.exosome complex.associated...	0.01	OrthoFinder output from all 47 species
Ehy_g07964	No alias	component *(SOP1) of PAXT RNA-exosome-activation complex...	0.02	OrthoFinder output from all 47 species
GSVIVT01008802001	No alias	RNA processing.RNA decay.exosome complex.associated...	0.03	OrthoFinder output from all 47 species
Pnu_g21810	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Solyc04g057990.4.1	Solyc04g057990	RNA degradation surveillance factor (SOP1)	0.03	OrthoFinder output from all 47 species
Tin_g16673	No alias	component *(SOP1) of PAXT RNA-exosome-activation complex...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0004721	phosphoprotein phosphatase activity	IEP	HCCA
MF	GO:0008138	protein tyrosine/serine/threonine phosphatase activity	IEP	HCCA
BP	GO:0016311	dephosphorylation	IEP	HCCA
MF	GO:0016791	phosphatase activity	IEP	HCCA
MF	GO:0042578	phosphoric ester hydrolase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003657	WRKY_dom	387	444

External Links

No external refs found!

Aev_g21965

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation