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  5. Spa_g29647

Spa_g29647


Description : not classified & original description: none


Gene families : OG0004428 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004428_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g29647
Cluster HCCA: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
Adi_g021099 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g13675 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.18G047800.1 Ceric.18G047800 not classified & original description: pacid=50622555... 0.04 OrthoFinder output from all 47 species
Cre19.g751197 No alias No description available 0.03 OrthoFinder output from all 47 species
Dcu_g11589 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
LOC_Os02g54110.1 LOC_Os02g54110 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_242029g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_55053g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Ore_g36824 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0038.g012003 No alias not classified & original description: CDS=123-3902 0.03 OrthoFinder output from all 47 species
Smo78845 No alias No description available 0.02 OrthoFinder output from all 47 species
Tin_g09496 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006284 base-excision repair IEP HCCA
BP GO:0006405 RNA export from nucleus IEP HCCA
BP GO:0006406 mRNA export from nucleus IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0015931 nucleobase-containing compound transport IEP HCCA
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP HCCA
BP GO:0016973 poly(A)+ mRNA export from nucleus IEP HCCA
MF GO:0019104 DNA N-glycosylase activity IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0050657 nucleic acid transport IEP HCCA
BP GO:0050658 RNA transport IEP HCCA
BP GO:0051028 mRNA transport IEP HCCA
BP GO:0051168 nuclear export IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051236 establishment of RNA localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR012978 RRP12-like_dom 409 610
No external refs found!