Spa_g29344

Description : component *(eL21) of large ribosomal-subunit (LSU) proteome & original description: none

Gene families : OG0001239 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001239_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Spa_g29344
Cluster	HCCA: Cluster_61

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00016p00252940	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.05	OrthoFinder output from all 47 species
AMTR_s00024p00178920	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.04	OrthoFinder output from all 47 species
AT1G09590	No alias	Translation protein SH3-like family protein	0.08	OrthoFinder output from all 47 species
AT1G09690	No alias	Translation protein SH3-like family protein	0.08	OrthoFinder output from all 47 species
AT1G57660	No alias	Translation protein SH3-like family protein	0.07	OrthoFinder output from all 47 species
Adi_g043900	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Adi_g043901	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Ala_g12117	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Als_g08626	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Als_g08627	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Als_g38962	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Als_g55086	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Aob_g03881	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Aop_g05077	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Aop_g09546	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Aop_g17674	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Aop_g54674	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Azfi_s0005.g009168	No alias	not classified & original description: CDS=164-400	0.03	OrthoFinder output from all 47 species
Azfi_s0509.g074695	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Cba_g09458	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Cba_g68360	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ceric.07G094100.1	Ceric.07G094100	component *(eL21) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Ceric.10G032200.1	Ceric.10G032200	component *(eL21) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Ceric.24G006900.1	Ceric.24G006900	component *(eL21) of large ribosomal-subunit (LSU)...	0.1	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000640.5	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.08	OrthoFinder output from all 47 species
Cre06.g278135	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.08	OrthoFinder output from all 47 species
Dac_g13798	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.09	OrthoFinder output from all 47 species
Dac_g25425	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Dcu_g30991	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Dde_g13227	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
GSVIVT01001130001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.08	OrthoFinder output from all 47 species
GSVIVT01033444001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.04	OrthoFinder output from all 47 species
Gb_09077	No alias	component RPL21 of LSU proteome component	0.07	OrthoFinder output from all 47 species
LOC_Os03g04750.1	LOC_Os03g04750	component RPL21 of LSU proteome component	0.09	OrthoFinder output from all 47 species
LOC_Os10g32820.1	LOC_Os10g32820	component RPL21 of LSU proteome component	0.04	OrthoFinder output from all 47 species
Len_g11206	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Lfl_g16262	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
MA_186351g0010	No alias	component RPL21 of LSU proteome component	0.03	OrthoFinder output from all 47 species
MA_40819g0010	No alias	component RPL21 of LSU proteome component	0.03	OrthoFinder output from all 47 species
Mp6g01390.1	No alias	component RPL21 of LSU proteome component	0.06	OrthoFinder output from all 47 species
Msp_g33917	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Msp_g34423	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Nbi_g06034	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ore_g18005	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Pp3c12_9320V3.1	Pp3c12_9320	Translation protein SH3-like family protein	0.04	OrthoFinder output from all 47 species
Pp3c13_2360V3.1	Pp3c13_2360	Translation protein SH3-like family protein	0.02	OrthoFinder output from all 47 species
Pp3c3_5550V3.1	Pp3c3_5550	Translation protein SH3-like family protein	0.07	OrthoFinder output from all 47 species
Pp3c4_21520V3.1	Pp3c4_21520	Translation protein SH3-like family protein	0.03	OrthoFinder output from all 47 species
Sam_g15602	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Sam_g38886	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Sam_g52957	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Smo170832	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
Solyc10g078960.2.1	Solyc10g078960	component RPL21 of LSU proteome component	0.08	OrthoFinder output from all 47 species
Solyc10g080590.2.1	Solyc10g080590	component RPL21 of LSU proteome component	0.1	OrthoFinder output from all 47 species
Tin_g29829	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Tin_g39769	No alias	component *(eL21) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Zm00001e000341_P001	Zm00001e000341	component RPL21 of LSU proteome component	0.03	OrthoFinder output from all 47 species
Zm00001e004623_P001	Zm00001e004623	component RPL21 of LSU proteome component	0.03	OrthoFinder output from all 47 species
Zm00001e012727_P001	Zm00001e012727	component RPL21 of LSU proteome component	0.04	OrthoFinder output from all 47 species
Zm00001e038963_P001	Zm00001e038963	component RPL21 of LSU proteome component	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
BP	GO:0006790	sulfur compound metabolic process	IEP	HCCA
BP	GO:0016226	iron-sulfur cluster assembly	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
BP	GO:0031163	metallo-sulfur cluster assembly	IEP	HCCA
MF	GO:0051536	iron-sulfur cluster binding	IEP	HCCA
MF	GO:0051540	metal cluster binding	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001147	Ribosomal_L21e	19	119

External Links

No external refs found!

Spa_g29344

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation