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  5. Spa_g29254

Spa_g29254 (HSS, ARF1-BP, ARF2, ORE14)


Aliases : HSS, ARF1-BP, ARF2, ORE14

Description : ARF-type transcription factor & original description: none


Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g29254

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00157690 ARF6,... RNA biosynthesis.transcriptional activation.B3... 0.04 OrthoFinder output from all 47 species
AMTR_s00036p00215020 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
AT1G19850 MP, IAA24, ARF5 Transcriptional factor B3 family protein /... 0.05 OrthoFinder output from all 47 species
AT1G35240 ARF20 auxin response factor 20 0.03 OrthoFinder output from all 47 species
AT2G33860 ARF3, ETT Transcriptional factor B3 family protein /... 0.07 OrthoFinder output from all 47 species
AT5G37020 ARF8, ATARF8 auxin response factor 8 0.03 OrthoFinder output from all 47 species
Adi_g068596 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g089250 ARF6 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g107312 ARF16 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g02130 ARF16 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g06926 ARF1 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g14536 ARF1 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g11014 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g33345 ARF6 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g22072 ARF16 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g12632 ARF16 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene11714.t1 ARF6, Aspi01Gene11714 ARF-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene61150.t1 ARF16, Aspi01Gene61150 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0065.g035933 ARF6 not classified & original description: CDS=1-678 0.02 OrthoFinder output from all 47 species
Azfi_s0129.g048848 ARF6 ARF-type transcription factor & original description: CDS=56-2815 0.03 OrthoFinder output from all 47 species
Azfi_s0384.g067487 ARF8, ATARF8 ARF-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Cba_g04069 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g78264 ARF16 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.18G034300.1 ARF16, Ceric.18G034300 ARF-type transcription factor & original description:... 0.06 OrthoFinder output from all 47 species
Ceric.29G070000.1 ARF6, Ceric.29G070000 ARF-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.35G054000.1 ARF6, Ceric.35G054000 ARF-type transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Ehy_g15200 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g30682 ARF10 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01011008001 HSS, ARF1-BP, ARF2, ORE14 RNA biosynthesis.transcriptional activation.B3... 0.05 OrthoFinder output from all 47 species
GSVIVT01021552001 ARF6 RNA biosynthesis.transcriptional activation.B3... 0.05 OrthoFinder output from all 47 species
GSVIVT01025691001 ARF16 RNA biosynthesis.transcriptional activation.B3... 0.03 OrthoFinder output from all 47 species
GSVIVT01035204001 ARF8, ATARF8 RNA biosynthesis.transcriptional activation.B3... 0.03 OrthoFinder output from all 47 species
GSVIVT01035205001 ARF8, ATARF8 Auxin response factor 12 OS=Oryza sativa subsp. japonica 0.02 OrthoFinder output from all 47 species
Gb_12414 HSS, ARF1-BP, ARF2, ORE14 transcription factor (ARF) 0.05 OrthoFinder output from all 47 species
Gb_15247 HSS, ARF1-BP, ARF2, ORE14 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Gb_39686 ARF6 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Gb_39786 ARF16 transcription factor (ARF) 0.04 OrthoFinder output from all 47 species
LOC_Os01g48060.1 ARF3, ETT, LOC_Os01g48060 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
LOC_Os04g56850.1 MP, IAA24, ARF5,... transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
LOC_Os05g43920.1 ARF3, ETT, LOC_Os05g43920 transcription factor (ARF) 0.04 OrthoFinder output from all 47 species
LOC_Os10g33940.1 ARF16, LOC_Os10g33940 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Len_g17368 ARF6 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Len_g28161 ARF16 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g07072 ARF16 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
MA_10431695g0010 ARF19, IAA22, ARF11 Auxin response factor 19 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
MA_10432580g0010 HSS, ARF1-BP, ARF2, ORE14 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
MA_122218g0010 ARF19, IAA22, ARF11 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Mp1g12750.1 ARF6 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Msp_g14175 ARF6 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g06806 ARF1 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g08684 ARF6 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g25154 HSS, ARF1-BP, ARF2, ORE14 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g41869 ARF17 ARF-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g31022 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002378 ARF1 ARF-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0019.g007919 ARF19, IAA22, ARF11 ARF-type transcription factor & original description: CDS=1-3501 0.03 OrthoFinder output from all 47 species
Smo438333 TIR5, MSG1,... Auxin response factor 11 OS=Oryza sativa subsp. indica 0.03 OrthoFinder output from all 47 species
Solyc05g056040.3.1 ARF11, Solyc05g056040 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Solyc10g086130.3.1 ARF16, Solyc10g086130 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Spa_g55179 ARF6 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g27871 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e003229_P002 ARF6, Zm00001e003229 transcription factor (ARF) 0.04 OrthoFinder output from all 47 species
Zm00001e006577_P003 ARF8, ATARF8,... transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Zm00001e006640_P002 MP, IAA24, ARF5,... transcription factor (ARF) 0.04 OrthoFinder output from all 47 species
Zm00001e016366_P002 ARF11, Zm00001e016366 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Zm00001e018126_P002 ARF6, Zm00001e018126 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Zm00001e020205_P004 ARF3, ETT, Zm00001e020205 transcription factor (ARF) 0.05 OrthoFinder output from all 47 species
Zm00001e030325_P003 ARF6, Zm00001e030325 transcription factor (ARF) 0.04 OrthoFinder output from all 47 species
Zm00001e032423_P002 ARF3, ETT, Zm00001e032423 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Zm00001e041910_P003 ARF8, ATARF8,... transcription factor (ARF) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003849 3-deoxy-7-phosphoheptulonate synthase activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009072 aromatic amino acid metabolic process IEP HCCA
BP GO:0009073 aromatic amino acid family biosynthetic process IEP HCCA
BP GO:0010215 cellulose microfibril organization IEP HCCA
MF GO:0010309 acireductone dioxygenase [iron(II)-requiring] activity IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP HCCA
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0030198 extracellular matrix organization IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043062 extracellular structure organization IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
MF GO:0051213 dioxygenase activity IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR010525 ARF_dom 288 370
IPR003340 B3_DNA-bd 163 263
IPR033389 AUX/IAA_dom 742 840
No external refs found!