1. Home
  2. Species
  3. Stenochlaena palustris
  4. Sequence
  5. Spa_g28690

Spa_g28690 (SOC1, AGL20, ATSOC1)


Aliases : SOC1, AGL20, ATSOC1

Description : MADS/AGL-type transcription factor & original description: none


Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g28690

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00270400 AGL32, TT16,... RNA biosynthesis.transcriptional activation.MADS box... 0.02 OrthoFinder output from all 47 species
AMTR_s00021p00254030 SHP2, AGL5,... RNA biosynthesis.transcriptional activation.MADS box... 0.02 OrthoFinder output from all 47 species
AMTR_s00066p00109320 AP3, ATAP3,... RNA biosynthesis.transcriptional activation.MADS box... 0.03 OrthoFinder output from all 47 species
AMTR_s00071p00193200 STK, AGL11,... RNA biosynthesis.transcriptional activation.MADS box... 0.02 OrthoFinder output from all 47 species
AMTR_s00071p00198970 XAL1, AGL12,... RNA biosynthesis.transcriptional activation.MADS box... 0.03 OrthoFinder output from all 47 species
AT2G22540 SVP, AGL22 K-box region and MADS-box transcription factor family protein 0.03 OrthoFinder output from all 47 species
AT2G26320 AGL33 AGAMOUS-like 33 0.03 OrthoFinder output from all 47 species
AT2G45650 AGL6 AGAMOUS-like 6 0.03 OrthoFinder output from all 47 species
AT4G11880 AGL14 AGAMOUS-like 14 0.04 OrthoFinder output from all 47 species
Ala_g05851 AGL30 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g26342 AGL6 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g38807 AGL91 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g04227 AGL18 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g70933 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene13944.t1 AGL18, Aspi01Gene13944 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene17777.t1 SHP2, AGL5,... MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0003.g007710 AGL6 MADS/AGL-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ceric.12G051800.1 GL19, AGL19,... MADS/AGL-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Ceric.16G027500.1 AGL16, Ceric.16G027500 MADS/AGL-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ceric.39G001800.1 AGL104, Ceric.39G001800 MADS/AGL-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Dac_g06265 AGL15 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g08553 GL19, AGL19 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g43724 AGL16 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g15929 AGL16 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g21427 STK, AGL11 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01021534001 AGL62 RNA biosynthesis.transcriptional activation.MADS box... 0.02 OrthoFinder output from all 47 species
GSVIVT01037022001 AGL62 RNA biosynthesis.transcriptional activation.MADS box... 0.03 OrthoFinder output from all 47 species
GSVIVT01037024001 AGL62 RNA biosynthesis.transcriptional activation.MADS box... 0.03 OrthoFinder output from all 47 species
GSVIVT01038474001 AGL16 RNA biosynthesis.transcriptional activation.MADS box... 0.02 OrthoFinder output from all 47 species
Gb_03806 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Gb_03807 AGL16 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Gb_15398 PI transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Gb_16301 STK, AGL11 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
LOC_Os01g10504.1 SHP2, AGL5,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
LOC_Os02g36924.1 AGL16, LOC_Os02g36924 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
LOC_Os02g45770.1 AGL6, LOC_Os02g45770 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
LOC_Os03g54170.1 AGL2, SEP1,... transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
LOC_Os04g38780.1 AGL16, LOC_Os04g38780 MADS-box transcription factor 27 OS=Oryza sativa subsp.... 0.02 OrthoFinder output from all 47 species
LOC_Os05g11380.1 STK, AGL11,... transcription factor (MADS/AGL) 0.04 OrthoFinder output from all 47 species
Len_g56878 STK, AGL11 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g14037 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10432817g0010 SVP, AGL22 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
MA_16629g0010 ANR1, AGL44 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
MA_5917g0010 AGL9, SEP3 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
MA_6544g0010 STK, AGL11 Floral homeotic protein AGAMOUS OS=Panax ginseng... 0.03 OrthoFinder output from all 47 species
Msp_g06052 No alias MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g62136 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0027.g009704 ANR1, AGL44 MADS/AGL-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Sam_g27719 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g106710.1.1 AGL62, Solyc01g106710 component MED19 of head module of MEDIATOR transcription... 0.02 OrthoFinder output from all 47 species
Solyc06g059970.4.1 PI, Solyc06g059970 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Spa_g14680 AGL16 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g26227 STK, AGL11 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e016529_P004 SHP2, AGL5,... transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Zm00001e022819_P002 AGL16, Zm00001e022819 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Zm00001e032487_P001 AGL61, DIA,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006576 biogenic amine metabolic process IEP HCCA
BP GO:0009308 amine metabolic process IEP HCCA
BP GO:0009309 amine biosynthetic process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
MF GO:0030410 nicotianamine synthase activity IEP HCCA
BP GO:0030417 nicotianamine metabolic process IEP HCCA
BP GO:0030418 nicotianamine biosynthetic process IEP HCCA
BP GO:0042401 biogenic amine biosynthetic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:0072350 tricarboxylic acid metabolic process IEP HCCA
BP GO:0072351 tricarboxylic acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002487 TF_Kbox 109 194
IPR002100 TF_MADSbox 35 82
No external refs found!