Spa_g28673


Description : component *(uL6) of large ribosomal-subunit (LSU) proteome & original description: none


Gene families : OG0001493 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001493_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g28673
Cluster HCCA: Cluster_47

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00018p00131950 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.09 OrthoFinder output from all 47 species
AMTR_s00048p00062300 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.06 OrthoFinder output from all 47 species
AT1G33120 No alias Ribosomal protein L6 family 0.06 OrthoFinder output from all 47 species
AT1G33140 PGY2 Ribosomal protein L6 family 0.05 OrthoFinder output from all 47 species
AT4G10450 No alias Ribosomal protein L6 family 0.07 OrthoFinder output from all 47 species
Adi_g042779 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Adi_g042780 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Adi_g046740 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ala_g08837 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Als_g56568 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Aop_g00197 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Aspi01Gene57067.t1 Aspi01Gene57067 component *(uL6) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Azfi_s0007.g011131 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Ceric.13G058300.1 Ceric.13G058300 component *(uL6) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ceric.1Z004300.1 Ceric.1Z004300 component *(uL6) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001532.12 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.12 OrthoFinder output from all 47 species
Cre12.g494050 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.12 OrthoFinder output from all 47 species
Dac_g00432 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Dcu_g27021 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
GSVIVT01016795001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.08 OrthoFinder output from all 47 species
GSVIVT01038670001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.06 OrthoFinder output from all 47 species
LOC_Os02g01332.1 LOC_Os02g01332 component RPL9 of LSU proteome component 0.05 OrthoFinder output from all 47 species
LOC_Os09g31180.1 LOC_Os09g31180 component RPL9 of LSU proteome component 0.06 OrthoFinder output from all 47 species
Len_g14020 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
MA_38141g0010 No alias component RPL9 of LSU proteome component 0.05 OrthoFinder output from all 47 species
Mp4g24070.1 No alias component RPL9 of LSU proteome component 0.06 OrthoFinder output from all 47 species
Msp_g02241 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Nbi_g06570 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Ore_g07770 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Pir_g01800 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Pir_g60986 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Pp3c10_8500V3.1 Pp3c10_8500 Ribosomal protein L6 family 0.06 OrthoFinder output from all 47 species
Pp3c14_8600V3.1 Pp3c14_8600 Ribosomal protein L6 family 0.08 OrthoFinder output from all 47 species
Pp3c16_20070V3.1 Pp3c16_20070 Ribosomal protein L6 family 0.05 OrthoFinder output from all 47 species
Ppi_g28530 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ppi_g34050 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ppi_g56682 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sam_g05554 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Sam_g11980 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Sam_g12947 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sam_g12948 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Sam_g32375 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Smo269009 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.07 OrthoFinder output from all 47 species
Solyc06g073310.3.1 Solyc06g073310 component RPL9 of LSU proteome component 0.12 OrthoFinder output from all 47 species
Solyc08g014550.3.1 Solyc08g014550 component RPL9 of LSU proteome component 0.11 OrthoFinder output from all 47 species
Solyc12g096700.2.1 Solyc12g096700 component RPL9 of LSU proteome component 0.12 OrthoFinder output from all 47 species
Spa_g22811 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Spa_g43562 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Tin_g00341 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Zm00001e025404_P001 Zm00001e025404 component RPL9 of LSU proteome component 0.06 OrthoFinder output from all 47 species
Zm00001e029810_P003 Zm00001e029810 component RPL9 of LSU proteome component 0.12 OrthoFinder output from all 47 species
Zm00001e036699_P002 Zm00001e036699 component RPL9 of LSU proteome component 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
MF GO:0019843 rRNA binding IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
InterPro domains Description Start Stop
IPR020040 Ribosomal_L6_a/b-dom 109 164
IPR020040 Ribosomal_L6_a/b-dom 12 86
No external refs found!