Aliases : LSH4
Description : plant-specific ALOG-type transcription factor & original description: none
Gene families : OG0001118 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001118_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00153p00047660 | evm_27.TU.AmTr_v1... | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6... | 0.03 | OrthoFinder output from all 47 species | |
AMTR_s00155p00022580 | LSH6,... | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... | 0.02 | OrthoFinder output from all 47 species | |
AT3G04510 | LSH2 | Protein of unknown function (DUF640) | 0.02 | OrthoFinder output from all 47 species | |
AT4G18610 | LSH9 | Protein of unknown function (DUF640) | 0.03 | OrthoFinder output from all 47 species | |
Als_g27588 | LSH4 | plant-specific ALOG-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Aop_g21143 | LSH6 | plant-specific ALOG-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Cba_g31587 | LSH4 | plant-specific ALOG-type transcription factor & original... | 0.02 | OrthoFinder output from all 47 species | |
Ceric.14G090800.1 | LSH6, Ceric.14G090800 | plant-specific ALOG-type transcription factor & original... | 0.04 | OrthoFinder output from all 47 species | |
Ceric.18G075200.1 | LSH4, Ceric.18G075200 | plant-specific ALOG-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Ceric.22G071900.1 | LSH6, Ceric.22G071900 | plant-specific ALOG-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Ceric.29G008000.1 | LSH4, Ceric.29G008000 | plant-specific ALOG-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Dac_g03257 | LSH4 | plant-specific ALOG-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Dac_g18837 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Dac_g44523 | LSH4 | plant-specific ALOG-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Dde_g22007 | LSH4 | plant-specific ALOG-type transcription factor & original... | 0.02 | OrthoFinder output from all 47 species | |
GSVIVT01023521001 | No alias | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4... | 0.04 | OrthoFinder output from all 47 species | |
Gb_15426 | LSH4 | Protein G1-like5 OS=Oryza sativa subsp. japonica... | 0.02 | OrthoFinder output from all 47 species | |
Gb_36840 | LSH4 | Protein G1-like6 OS=Oryza sativa subsp. indica... | 0.04 | OrthoFinder output from all 47 species | |
Gb_39186 | No alias | Protein G1-like6 OS=Oryza sativa subsp. indica... | 0.04 | OrthoFinder output from all 47 species | |
LOC_Os02g41460.1 | LSH4, LOC_Os02g41460 | Protein G1-like3 OS=Oryza sativa subsp. indica... | 0.03 | OrthoFinder output from all 47 species | |
LOC_Os05g28040.1 | LSH6, LOC_Os05g28040 | Protein G1-like9 OS=Oryza sativa subsp. indica... | 0.02 | OrthoFinder output from all 47 species | |
LOC_Os05g39500.1 | LSH6, LOC_Os05g39500 | Protein G1-like8 OS=Oryza sativa subsp. japonica... | 0.03 | OrthoFinder output from all 47 species | |
Len_g03807 | LSH1 | plant-specific ALOG-type transcription factor & original... | 0.04 | OrthoFinder output from all 47 species | |
MA_211369g0010 | LSH3 | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... | 0.03 | OrthoFinder output from all 47 species | |
Mp2g00330.1 | LSH4 | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... | 0.02 | OrthoFinder output from all 47 species | |
Nbi_g02008 | LSH4 | plant-specific ALOG-type transcription factor & original... | 0.04 | OrthoFinder output from all 47 species | |
Pir_g10661 | LSH4 | plant-specific ALOG-type transcription factor & original... | 0.02 | OrthoFinder output from all 47 species | |
Ppi_g32132 | LSH4 | plant-specific ALOG-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0149.g023275 | LSH4 | plant-specific ALOG-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0158.g023794 | LSH4 | plant-specific ALOG-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Solyc05g055020.4.1 | LSH1, Solyc05g055020 | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1... | 0.02 | OrthoFinder output from all 47 species | |
Solyc09g025280.1.1 | LSH4, Solyc09g025280 | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... | 0.02 | OrthoFinder output from all 47 species | |
Tin_g09211 | LSH6 | plant-specific ALOG-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e004570_P001 | LSH4, Zm00001e004570 | Protein G1-like4 OS=Oryza sativa subsp. indica... | 0.04 | OrthoFinder output from all 47 species | |
Zm00001e012687_P001 | LSH4, Zm00001e012687 | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... | 0.02 | OrthoFinder output from all 47 species | |
Zm00001e019403_P001 | LSH6, Zm00001e019403 | Protein G1-like7 OS=Oryza sativa subsp. indica... | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e030343_P002 | LSH4, Zm00001e030343 | Protein G1-like2 OS=Oryza sativa subsp. indica... | 0.02 | OrthoFinder output from all 47 species | |
Zm00001e037775_P001 | LSH4, Zm00001e037775 | Protein G1-like2 OS=Oryza sativa subsp. indica... | 0.04 | OrthoFinder output from all 47 species | |
Zm00001e041238_P001 | LSH4, Zm00001e041238 | Protein G1-like3 OS=Oryza sativa subsp. indica... | 0.02 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003677 | DNA binding | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR006936 | ALOG_dom | 215 | 330 |
No external refs found! |