Spa_g28117


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g28117
Cluster HCCA: Cluster_85

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00078p00195340 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
Adi_g018038 LPA66 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g11263 OSB3 ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g07887 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g17265 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g36208 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g16177 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g06679 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g23671 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g23952 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g26341 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g26678 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g28699 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g31647 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g31824 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g67754 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g68110 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g69416 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g70449 DOT4 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0051.g031381 MEF19 not classified & original description: CDS=1-1371 0.07 OrthoFinder output from all 47 species
Azfi_s1395.g102559 No alias not classified & original description: CDS=1-912 0.06 OrthoFinder output from all 47 species
Azfi_s3922.g117339 No alias not classified & original description: CDS=1-831 0.06 OrthoFinder output from all 47 species
Cba_g29578 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ceric.28G068900.1 Ceric.28G068900 not classified & original description: pacid=50570286... 0.04 OrthoFinder output from all 47 species
Dcu_g26473 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g11730 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g22711 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g50757 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g29034 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
LOC_Os09g07780.1 OTP84, LOC_Os09g07780 Pentatricopeptide repeat-containing protein At3g57430,... 0.05 OrthoFinder output from all 47 species
Len_g17363 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g17769 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g07034 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g33029 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g14364 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g35189 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g41100 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g06586 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g13423 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g14034 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g20343 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g25933 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g27842 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g16979 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g35928 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g04449 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g29809 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g05733 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06806 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g07362 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g07430 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g13349 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g29308 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g29767 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g35966 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g46621 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53022 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g53918 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g57817 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g62956 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0008.g004070 CRR22 not classified & original description: CDS=1-2127 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0013.g005856 No alias not classified & original description: CDS=1-2292 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0029.g010179 No alias not classified & original description: CDS=88-2685 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0071.g016873 No alias not classified & original description: CDS=1-2589 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0223.g026268 No alias not classified & original description: CDS=1-2328 0.02 OrthoFinder output from all 47 species
Solyc06g068810.4.1 Solyc06g068810 Pentatricopeptide repeat-containing protein At5g50990... 0.04 OrthoFinder output from all 47 species
Solyc07g062820.1.1 Solyc07g062820 RNA editing factor (SEL1/PDM1) 0.03 OrthoFinder output from all 47 species
Solyc12g096510.3.1 Solyc12g096510 Pentatricopeptide repeat-containing protein At5g66520... 0.05 OrthoFinder output from all 47 species
Spa_g09894 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g09909 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g15016 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g15589 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g23793 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g26191 EMB2261 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g26356 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g54669 MEF9 ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g08462 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 136 183
IPR002885 Pentatricopeptide_repeat 238 285
No external refs found!