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  5. Spa_g27232

Spa_g27232


Description : trans-splicing factor *(PPR4) & original description: none


Gene families : OG0007144 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007144_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g27232

Target Alias Description ECC score Gene Family Method Actions
Aspi01Gene10935.t1 Aspi01Gene10935 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.23G051700.1 Ceric.23G051700 trans-splicing factor *(PPR4) & original description:... 0.02 OrthoFinder output from all 47 species
Lfl_g07399 No alias trans-splicing factor *(PPR4) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g04509 No alias trans-splicing factor *(PPR4) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g08436 No alias trans-splicing factor *(PPR4) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc11g006680.3.1 Solyc11g006680 Pentatricopeptide repeat-containing protein At5g04810,... 0.02 OrthoFinder output from all 47 species
Zm00001e041970_P002 Zm00001e041970 Pentatricopeptide repeat-containing protein At5g04810,... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 674 719
IPR000504 RRM_dom 181 253
IPR002885 Pentatricopeptide_repeat 352 402
IPR002885 Pentatricopeptide_repeat 415 470
IPR002885 Pentatricopeptide_repeat 764 820
IPR033443 PPR_long 509 643
No external refs found!