Zm00001d043922 (GRMZM2G437460)

Aliases : GRMZM2G437460

Description : 27.3.4 RNA.regulation of transcription.ARF, Auxin Response Factor family ettin (ett) mutations have pleiotropic effects on Arabidopsis flower development, causing increases in perianth organ number, decreases in stamen number and anther formation, and apical-basal patterning defects in the gynoecium. The ETTIN gene encodes a protein with homology to DNA binding proteins which bind to auxin response elements. ETT transcript is expressed throughout stage 1 floral meristems and subsequently resolves to a complex pattern within petal, stamen and carpel primordia. ETT probably functions to impart regional identity in floral meristems that affects perianth organ number spacing, stamen formation, and regional differentiation in stamens and the gynoecium. During stage 5, ETT expression appears in a ring at the top of the floral meristem before morphological appearance of the gynoecium, consistent with the proposal that ETT is involved in prepatterning apical and basal boundaries in the gynoecium primordium. It is a target of the ta-siRNA tasiR-ARF.

Gene families : OG_01_0000037 (Gene family) Phylogenetic Tree(s): OG0000037_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR network (cutoff 100): Zm00001d043922
Cluster	HCCA cluster: Cluster_164

Target	Alias	Description	ECC score	Gene Family Method
AT1G19850	MP, IAA24, ARF5	Transcriptional factor B3 family protein /...	0.05	Gene family
AT1G35240	ARF20	auxin response factor 20	0.03	Gene family
AT3G61830	ARF18	auxin response factor 18	0.05	Gene family
GSVIVT01008639001	No alias	27.3.4 RNA.regulation of transcription.ARF, Auxin...	0.02	Gene family
GSVIVT01008950001	No alias	27.3.4 RNA.regulation of transcription.ARF, Auxin...	0.03	Gene family
GSVIVT01023149001	No alias	27.3.4 RNA.regulation of transcription.ARF, Auxin...	0.02	Gene family
GSVIVT01035204001	No alias	27.3.4 RNA.regulation of transcription.ARF, Auxin...	0.02	Gene family
LOC_Os02g35140	Os02g0557200	27.3.4 RNA.regulation of transcription.ARF, Auxin...	0.02	Gene family
LOC_Os04g56850	Os04g0664400	27.3.4 RNA.regulation of transcription.ARF, Auxin...	0.07	Gene family
LOC_Os11g32110	Os11g0523800	27.3.4 RNA.regulation of transcription.ARF, Auxin...	0.06	Gene family
MA_10430707g0020	No alias	27.3.4 RNA.regulation of transcription.ARF, Auxin...	0.02	Gene family
MA_10431695g0010	No alias	27.3.4 RNA.regulation of transcription.ARF, Auxin...	0.02	Gene family
MA_122218g0010	No alias	27.3.4 RNA.regulation of transcription.ARF, Auxin...	0.02	Gene family
Zm00001d011953	GRMZM2G116557	27.3.4 RNA.regulation of transcription.ARF, Auxin...	0.04	Gene family
Zm00001d023659	GRMZM2G006042	27.3.4 RNA.regulation of transcription.ARF, Auxin...	0.03	Gene family
Zm00001d026540	GRMZM2G086949	No description available	0.07	Gene family
Zm00001d032683	GRMZM2G153233	27.3.4 RNA.regulation of transcription.ARF, Auxin...	0.04	Gene family

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	InterProScan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	InterProScan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR003340	B3_DNA-bd	147	248
IPR010525	Auxin_resp	273	353

External Links

No external refs found!

Zm00001d043922 (GRMZM2G437460)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation