Zm00001d043922 (GRMZM2G437460)


Aliases : GRMZM2G437460

Description : 27.3.4 RNA.regulation of transcription.ARF, Auxin Response Factor family ettin (ett) mutations have pleiotropic effects on Arabidopsis flower development, causing increases in perianth organ number, decreases in stamen number and anther formation, and apical-basal patterning defects in the gynoecium. The ETTIN gene encodes a protein with homology to DNA binding proteins which bind to auxin response elements. ETT transcript is expressed throughout stage 1 floral meristems and subsequently resolves to a complex pattern within petal, stamen and carpel primordia. ETT probably functions to impart regional identity in floral meristems that affects perianth organ number spacing, stamen formation, and regional differentiation in stamens and the gynoecium. During stage 5, ETT expression appears in a ring at the top of the floral meristem before morphological appearance of the gynoecium, consistent with the proposal that ETT is involved in prepatterning apical and basal boundaries in the gynoecium primordium. It is a target of the ta-siRNA tasiR-ARF.


Gene families : OG_01_0000037 (Gene family) Phylogenetic Tree(s): OG0000037_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Zm00001d043922
Cluster HCCA cluster: Cluster_164

Target Alias Description ECC score Gene Family Method Actions
AT1G19850 MP, IAA24, ARF5 Transcriptional factor B3 family protein /... 0.05 Gene family
AT1G35240 ARF20 auxin response factor 20 0.03 Gene family
AT3G61830 ARF18 auxin response factor 18 0.05 Gene family
GSVIVT01008639001 No alias 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.02 Gene family
GSVIVT01008950001 No alias 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.03 Gene family
GSVIVT01023149001 No alias 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.02 Gene family
GSVIVT01035204001 No alias 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.02 Gene family
LOC_Os02g35140 Os02g0557200 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.02 Gene family
LOC_Os04g56850 Os04g0664400 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.07 Gene family
LOC_Os11g32110 Os11g0523800 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.06 Gene family
MA_10430707g0020 No alias 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.02 Gene family
MA_10431695g0010 No alias 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.02 Gene family
MA_122218g0010 No alias 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.02 Gene family
Zm00001d011953 GRMZM2G116557 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.04 Gene family
Zm00001d023659 GRMZM2G006042 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.03 Gene family
Zm00001d026540 GRMZM2G086949 No description available 0.07 Gene family
Zm00001d032683 GRMZM2G153233 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.04 Gene family

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan
CC GO:0005634 nucleus IEA InterProScan
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan
BP GO:0009725 response to hormone IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 147 248
IPR010525 Auxin_resp 273 353
No external refs found!