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  5. Spa_g26579

Spa_g26579


Description : not classified & original description: none


Gene families : OG0000043 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g26579

Target Alias Description ECC score Gene Family Method Actions
Adi_g110200 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g07789 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05741 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g07076 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g07190 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g07485 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g26692 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g29411 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0006.g010264 No alias not classified & original description: CDS=1-2337 0.09 OrthoFinder output from all 47 species
Azfi_s0131.g049164 No alias not classified & original description: CDS=1-2763 0.05 OrthoFinder output from all 47 species
Azfi_s0250.g060258 No alias not classified & original description: CDS=1-1893 0.06 OrthoFinder output from all 47 species
Azfi_s0345.g065805 No alias not classified & original description: CDS=1-2679 0.05 OrthoFinder output from all 47 species
Azfi_s0469.g072874 CRR22 not classified & original description: CDS=1-1206 0.05 OrthoFinder output from all 47 species
Azfi_s1399.g102577 No alias not classified & original description: CDS=1-951 0.05 OrthoFinder output from all 47 species
Cba_g04021 OTP82 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g05819 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g06407 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g07456 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07482 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g07540 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Cba_g07738 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g10259 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g20804 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g29369 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g34890 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g74875 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g75111 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.15G051000.1 Ceric.15G051000 not classified & original description: pacid=50640878... 0.04 OrthoFinder output from all 47 species
Ceric.21G027500.1 Ceric.21G027500 not classified & original description: pacid=50603039... 0.04 OrthoFinder output from all 47 species
Ceric.26G030400.1 Ceric.26G030400 not classified & original description: pacid=50599909... 0.04 OrthoFinder output from all 47 species
Ceric.27G014200.1 Ceric.27G014200 not classified & original description: pacid=50605189... 0.08 OrthoFinder output from all 47 species
Ceric.33G035100.1 Ceric.33G035100 not classified & original description: pacid=50606945... 0.03 OrthoFinder output from all 47 species
Ceric.37G043200.1 Ceric.37G043200 not classified & original description: pacid=50616612... 0.05 OrthoFinder output from all 47 species
Dac_g09422 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g12578 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g29239 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g40274 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g04922 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g18161 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g18186 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g19719 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g22719 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g24777 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g26114 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g51244 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g51784 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g14566 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Len_g19433 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g03441 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g04282 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g06274 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g07364 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g16774 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g29540 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g32917 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g01227 CRR22 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g24031 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g26505 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g31946 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g45899 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g10135 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g13804 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g13837 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g17001 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g17066 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g17427 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g18405 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g25433 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g25475 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g07232 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g20234 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g64843 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g03867 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g06936 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g10292 EMB2758 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g17382 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g17674 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g18894 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g39388 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g42032 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0013.g005758 No alias not classified & original description: CDS=1-2499 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0013.g005759 No alias not classified & original description: CDS=1-3063 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0028.g009977 No alias not classified & original description: CDS=1-2472 0.04 OrthoFinder output from all 47 species
Sam_g48611 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g06220 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g06738 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g08784 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g09995 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 564 586
IPR002885 Pentatricopeptide_repeat 794 816
IPR002885 Pentatricopeptide_repeat 474 520
IPR002885 Pentatricopeptide_repeat 820 866
IPR002885 Pentatricopeptide_repeat 593 638
IPR002885 Pentatricopeptide_repeat 363 410
IPR002885 Pentatricopeptide_repeat 708 755
IPR002885 Pentatricopeptide_repeat 263 309
IPR002885 Pentatricopeptide_repeat 920 967
No external refs found!