1. Home
  2. Species
  3. Stenochlaena palustris
  4. Sequence
  5. Spa_g26562

Spa_g26562 (PUM1, APUM1)


Aliases : PUM1, APUM1

Description : not classified & original description: none


Gene families : OG0000583 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000583_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g26562

Target Alias Description ECC score Gene Family Method Actions
Gb_30039 PUM1, APUM1 Pumilio homolog 1 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
LOC_Os05g01910.1 PUM1, APUM1,... Pumilio homolog 2 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
MA_23070g0010 PUM1, APUM1 Pumilio homolog 1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Pnu_g11332 PUM1, APUM1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc03g123980.4.1 PUM5, APUM5,... Pumilio homolog 5 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
MF GO:0050661 NADP binding IEP HCCA
InterPro domains Description Start Stop
IPR012940 NABP 399 702
IPR001313 Pumilio_RNA-bd_rpt 779 812
IPR001313 Pumilio_RNA-bd_rpt 851 886
IPR001313 Pumilio_RNA-bd_rpt 745 776
IPR001313 Pumilio_RNA-bd_rpt 821 844
IPR001313 Pumilio_RNA-bd_rpt 707 741
IPR001313 Pumilio_RNA-bd_rpt 889 918
IPR001313 Pumilio_RNA-bd_rpt 924 952
No external refs found!