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  5. Spa_g26397

Spa_g26397 (UPF1, ATUPF1, LBA1)


Aliases : UPF1, ATUPF1, LBA1

Description : not classified & original description: none


Gene families : OG0001598 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001598_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g26397

Target Alias Description ECC score Gene Family Method Actions
Dde_g12727 UPF1, ATUPF1, LBA1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g12814 UPF1, ATUPF1, LBA1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g21440 UPF1, ATUPF1, LBA1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g08024 UPF1, ATUPF1, LBA1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g11374 UPF1, ATUPF1, LBA1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g29675 No alias Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP HCCA
MF GO:0003879 ATP phosphoribosyltransferase activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006547 histidine metabolic process IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016763 pentosyltransferase activity IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
InterPro domains Description Start Stop
IPR041679 DNA2/NAM7-like_C 578 776
IPR041677 DNA2/NAM7_AAA_11 344 570
No external refs found!