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  5. Spa_g25573

Spa_g25573


Description : not classified & original description: none


Gene families : OG0000563 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000563_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g25573

Target Alias Description ECC score Gene Family Method Actions
Aev_g10707 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g01137 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g34174 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g05511 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g09399 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g56329 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0410.g068508 No alias not classified & original description: CDS=242-1558 0.04 OrthoFinder output from all 47 species
Ceric.12G043400.1 Ceric.12G043400 not classified & original description: pacid=50601666... 0.03 OrthoFinder output from all 47 species
Ceric.19G006800.1 Ceric.19G006800 not classified & original description: pacid=50575954... 0.05 OrthoFinder output from all 47 species
Dac_g09258 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g22296 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Mp3g08570.1 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Solyc11g065730.3.1 Solyc11g065730 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Spa_g05527 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g10520 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e026627_P001 Zm00001e026627 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
CC GO:0000439 transcription factor TFIIH core complex IEP HCCA
MF GO:0001671 ATPase activator activity IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006289 nucleotide-excision repair IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA

No InterPro domains available for this sequence

No external refs found!