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  5. Spa_g25338

Spa_g25338


Description : histone *(H3) & original description: none


Gene families : OG0000128 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000128_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g25338
Cluster HCCA: Cluster_44

Target Alias Description ECC score Gene Family Method Actions
AT5G65350 HTR11 histone 3 11 0.03 OrthoFinder output from all 47 species
Als_g61760 No alias histone H3 variant *(CENH3) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g07784 No alias histone *(H3) & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os06g06510.1 LOC_Os06g06510 histone (H3) 0.02 OrthoFinder output from all 47 species
Lfl_g25103 No alias histone *(H3) & original description: none 0.02 OrthoFinder output from all 47 species
Mp7g18030.1 No alias histone (H3) 0.02 OrthoFinder output from all 47 species
Nbi_g01691 No alias histone H3 variant *(CENH3) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g62462 No alias histone *(H3) & original description: none 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0012.g005529 No alias not classified & original description: CDS=1-426 0.03 OrthoFinder output from all 47 species
Tin_g43939 No alias histone *(H3) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e008160_P001 Zm00001e008160 histone (H3) 0.04 OrthoFinder output from all 47 species
Zm00001e016861_P001 Zm00001e016861 histone (H3) 0.03 OrthoFinder output from all 47 species
Zm00001e019170_P001 Zm00001e019170 histone (H3) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000775 chromosome, centromeric region IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
BP GO:0007059 chromosome segregation IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0022414 reproductive process IEP HCCA
BP GO:0045132 meiotic chromosome segregation IEP HCCA
CC GO:0098687 chromosomal region IEP HCCA
BP GO:0098813 nuclear chromosome segregation IEP HCCA
BP GO:1903046 meiotic cell cycle process IEP HCCA
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 1 129
No external refs found!