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  5. Pp3c15_19420V3.1

Pp3c15_19420V3.1


Description : nuclear RNA polymerase A1


Gene families : OG_01_0006451 (Archaeplastida) Phylogenetic Tree(s): OG_01_0006451_tree ,
OG_02_0004749 (LandPlants) Phylogenetic Tree(s): OG_02_0004749_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c15_19420V3.1
Cluster HCCA: Cluster_412

Target Alias Description ECC score Gene Family Method Actions
Pp3c14_4000V3.1 No alias RNA polymerase II large subunit 0.01 Archaeplastida
Pp3c14_4010V3.1 No alias RNA polymerase II large subunit 0.02 Archaeplastida
Pp3c19_15140V3.1 No alias RNA polymerase II large subunit 0.01 Archaeplastida
Pp3c1_30040V3.1 No alias RNA polymerase II large subunit 0.02 Archaeplastida
Pp3c22_9940V3.1 No alias RNA polymerase II large subunit 0.04 Archaeplastida
Pp3c24_10300V3.1 No alias RNA polymerase II large subunit 0.02 Archaeplastida
Pp3c4_24940V3.1 No alias RNA polymerase II large subunit 0.01 Archaeplastida
Pp3c6_15700V3.1 No alias nuclear RNA polymerase C1 0.02 Archaeplastida
Pp3c8_4620V3.1 No alias RNA polymerase II large subunit 0.01 Archaeplastida
Pp3s67_110V3.1 No alias RNA polymerase II large subunit 0.02 Archaeplastida
Pp3c14_4000V3.1 No alias RNA polymerase II large subunit 0.01 LandPlants
Pp3c14_4010V3.1 No alias RNA polymerase II large subunit 0.02 LandPlants
Pp3c19_15140V3.1 No alias RNA polymerase II large subunit 0.01 LandPlants
Pp3c1_30040V3.1 No alias RNA polymerase II large subunit 0.02 LandPlants
Pp3c22_9940V3.1 No alias RNA polymerase II large subunit 0.04 LandPlants
Pp3c24_10300V3.1 No alias RNA polymerase II large subunit 0.02 LandPlants
Pp3c4_24940V3.1 No alias RNA polymerase II large subunit 0.01 LandPlants
Pp3c6_15700V3.1 No alias nuclear RNA polymerase C1 0.02 LandPlants
Pp3c8_4620V3.1 No alias RNA polymerase II large subunit 0.01 LandPlants
Pp3s67_110V3.1 No alias RNA polymerase II large subunit 0.02 LandPlants

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR007083 RNA_pol_Rpb1_4 486 574
IPR000722 RNA_pol_asu 273 343
IPR000722 RNA_pol_asu 237 272
IPR007066 RNA_pol_Rpb1_3 348 472
No external refs found!