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Aliases : LSH4
Description : plant-specific ALOG-type transcription factor & original description: none
Gene families : OG0001118 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001118_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00153p00047660 | evm_27.TU.AmTr_v1... | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6... | 0.05 | OrthoFinder output from all 47 species | |
| AMTR_s00155p00022580 | LSH6,... | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... | 0.03 | OrthoFinder output from all 47 species | |
| AT3G04510 | LSH2 | Protein of unknown function (DUF640) | 0.03 | OrthoFinder output from all 47 species | |
| AT3G23290 | LSH4 | No description available | 0.02 | OrthoFinder output from all 47 species | |
| AT4G18610 | LSH9 | Protein of unknown function (DUF640) | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g024284 | LSH4 | plant-specific ALOG-type transcription factor & original... | 0.04 | OrthoFinder output from all 47 species | |
| Ala_g01257 | LSH4 | plant-specific ALOG-type transcription factor & original... | 0.04 | OrthoFinder output from all 47 species | |
| Ala_g06922 | LSH4 | plant-specific ALOG-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
| Als_g04816 | LSH4 | plant-specific ALOG-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
| Als_g17249 | LSH4 | plant-specific ALOG-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g21143 | LSH6 | plant-specific ALOG-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene12712.t1 | LSH4, Aspi01Gene12712 | plant-specific ALOG-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene29667.t1 | LSH4, Aspi01Gene29667 | plant-specific ALOG-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene32958.t1 | LSH4, Aspi01Gene32958 | plant-specific ALOG-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0639.g080525 | LSH4 | plant-specific ALOG-type transcription factor & original... | 0.05 | OrthoFinder output from all 47 species | |
| Ceric.02G086500.1 | LSH4, Ceric.02G086500 | plant-specific ALOG-type transcription factor & original... | 0.05 | OrthoFinder output from all 47 species | |
| Ceric.14G090800.1 | LSH6, Ceric.14G090800 | plant-specific ALOG-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.18G075200.1 | LSH4, Ceric.18G075200 | plant-specific ALOG-type transcription factor & original... | 0.05 | OrthoFinder output from all 47 species | |
| Ceric.29G008000.1 | LSH4, Ceric.29G008000 | plant-specific ALOG-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g03257 | LSH4 | plant-specific ALOG-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g18837 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g44523 | LSH4 | plant-specific ALOG-type transcription factor & original... | 0.06 | OrthoFinder output from all 47 species | |
| Dde_g22007 | LSH4 | plant-specific ALOG-type transcription factor & original... | 0.05 | OrthoFinder output from all 47 species | |
| GSVIVT01014203001 | LSH10 | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 7... | 0.05 | OrthoFinder output from all 47 species | |
| GSVIVT01023521001 | No alias | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4... | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01027827001 | LSH10 | No description available | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01028348001 | LSH3 | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... | 0.03 | OrthoFinder output from all 47 species | |
| Gb_15426 | LSH4 | Protein G1-like5 OS=Oryza sativa subsp. japonica... | 0.04 | OrthoFinder output from all 47 species | |
| Gb_36840 | LSH4 | Protein G1-like6 OS=Oryza sativa subsp. indica... | 0.03 | OrthoFinder output from all 47 species | |
| Gb_39186 | No alias | Protein G1-like6 OS=Oryza sativa subsp. indica... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os02g41460.1 | LSH4, LOC_Os02g41460 | Protein G1-like3 OS=Oryza sativa subsp. indica... | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os02g56610.1 | LSH4, LOC_Os02g56610 | Protein G1-like6 OS=Oryza sativa subsp. indica... | 0.04 | OrthoFinder output from all 47 species | |
| Len_g03152 | LSH6 | plant-specific ALOG-type transcription factor & original... | 0.02 | OrthoFinder output from all 47 species | |
| Len_g03807 | LSH1 | plant-specific ALOG-type transcription factor & original... | 0.04 | OrthoFinder output from all 47 species | |
| Len_g04629 | LSH4 | plant-specific ALOG-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
| MA_12926g0010 | LSH4 | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... | 0.03 | OrthoFinder output from all 47 species | |
| MA_211369g0010 | LSH3 | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... | 0.04 | OrthoFinder output from all 47 species | |
| Msp_g25188 | LSH6 | plant-specific ALOG-type transcription factor & original... | 0.06 | OrthoFinder output from all 47 species | |
| Nbi_g02008 | LSH4 | plant-specific ALOG-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g26624 | LSH4 | plant-specific ALOG-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g20213 | LSH4 | plant-specific ALOG-type transcription factor & original... | 0.04 | OrthoFinder output from all 47 species | |
| Ppi_g32132 | LSH4 | plant-specific ALOG-type transcription factor & original... | 0.06 | OrthoFinder output from all 47 species | |
| Ppi_g53162 | LSH4 | plant-specific ALOG-type transcription factor & original... | 0.02 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0045.g013197 | LSH4 | plant-specific ALOG-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0149.g023275 | LSH4 | plant-specific ALOG-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0158.g023794 | LSH4 | plant-specific ALOG-type transcription factor & original... | 0.04 | OrthoFinder output from all 47 species | |
| Solyc06g083860.2.1 | LSH3, Solyc06g083860 | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... | 0.02 | OrthoFinder output from all 47 species | |
| Solyc07g062470.4.1 | LSH10, Solyc07g062470 | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc09g025280.1.1 | LSH4, Solyc09g025280 | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... | 0.02 | OrthoFinder output from all 47 species | |
| Solyc10g007310.1.1 | LSH10, Solyc10g007310 | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10... | 0.02 | OrthoFinder output from all 47 species | |
| Solyc10g008000.1.1 | LSH10, Solyc10g008000 | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc12g014260.1.1 | LSH10, Solyc12g014260 | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10... | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e004570_P001 | LSH4, Zm00001e004570 | Protein G1-like4 OS=Oryza sativa subsp. indica... | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e012687_P001 | LSH4, Zm00001e012687 | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e013711_P001 | LSH4, Zm00001e013711 | Protein G1-like2 OS=Oryza sativa subsp. indica... | 0.01 | OrthoFinder output from all 47 species | |
| Zm00001e019403_P001 | LSH6, Zm00001e019403 | Protein G1-like7 OS=Oryza sativa subsp. indica... | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e023022_P001 | LSH4, Zm00001e023022 | Protein G1-like3 OS=Oryza sativa subsp. indica... | 0.01 | OrthoFinder output from all 47 species | |
| Zm00001e027222_P001 | LSH6, Zm00001e027222 | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5... | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e027283_P001 | LSH6, Zm00001e027283 | Protein G1-like8 OS=Oryza sativa subsp. japonica... | 0.01 | OrthoFinder output from all 47 species | |
| Zm00001e030343_P002 | LSH4, Zm00001e030343 | Protein G1-like2 OS=Oryza sativa subsp. indica... | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e032784_P001 | LSH6, Zm00001e032784 | Protein G1 OS=Oryza sativa subsp. japonica... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e037775_P001 | LSH4, Zm00001e037775 | Protein G1-like2 OS=Oryza sativa subsp. indica... | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e041238_P001 | LSH4, Zm00001e041238 | Protein G1-like3 OS=Oryza sativa subsp. indica... | 0.01 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000160 | phosphorelay signal transduction system | IEP | HCCA |
| MF | GO:0000287 | magnesium ion binding | IEP | HCCA |
| MF | GO:0003743 | translation initiation factor activity | IEP | HCCA |
| MF | GO:0003779 | actin binding | IEP | HCCA |
| MF | GO:0004417 | hydroxyethylthiazole kinase activity | IEP | HCCA |
| BP | GO:0006066 | alcohol metabolic process | IEP | HCCA |
| BP | GO:0006413 | translational initiation | IEP | HCCA |
| BP | GO:0006766 | vitamin metabolic process | IEP | HCCA |
| BP | GO:0006767 | water-soluble vitamin metabolic process | IEP | HCCA |
| BP | GO:0006772 | thiamine metabolic process | IEP | HCCA |
| BP | GO:0006790 | sulfur compound metabolic process | IEP | HCCA |
| BP | GO:0009110 | vitamin biosynthetic process | IEP | HCCA |
| BP | GO:0009228 | thiamine biosynthetic process | IEP | HCCA |
| BP | GO:0034308 | primary alcohol metabolic process | IEP | HCCA |
| BP | GO:0034309 | primary alcohol biosynthetic process | IEP | HCCA |
| BP | GO:0035556 | intracellular signal transduction | IEP | HCCA |
| BP | GO:0042364 | water-soluble vitamin biosynthetic process | IEP | HCCA |
| BP | GO:0042723 | thiamine-containing compound metabolic process | IEP | HCCA |
| BP | GO:0042724 | thiamine-containing compound biosynthetic process | IEP | HCCA |
| BP | GO:0044272 | sulfur compound biosynthetic process | IEP | HCCA |
| BP | GO:0046165 | alcohol biosynthetic process | IEP | HCCA |
| BP | GO:0050789 | regulation of biological process | IEP | HCCA |
| BP | GO:0050794 | regulation of cellular process | IEP | HCCA |
| BP | GO:0065007 | biological regulation | IEP | HCCA |
| BP | GO:0072527 | pyrimidine-containing compound metabolic process | IEP | HCCA |
| BP | GO:0072528 | pyrimidine-containing compound biosynthetic process | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| BP | GO:1901615 | organic hydroxy compound metabolic process | IEP | HCCA |
| BP | GO:1901617 | organic hydroxy compound biosynthetic process | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR006936 | ALOG_dom | 126 | 243 |
| No external refs found! |