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  5. Spa_g22458

Spa_g22458 (PSRP4)


Aliases : PSRP4

Description : component *(bTHXc) of small plastid ribosomal-subunit proteome & original description: none


Gene families : OG0003575 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003575_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g22458
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
AT2G38140 PSRP4 plastid-specific ribosomal protein 4 0.03 OrthoFinder output from all 47 species
Aev_g09530 PSRP4 component *(bTHXc) of small plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Ala_g00113 PSRP4 component *(bTHXc) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Als_g33915 PSRP4 component *(bTHXc) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Ceric.36G025700.1 PSRP4, Ceric.36G025700 component *(bTHXc) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Dde_g08576 PSRP4 component *(bTHXc) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
LOC_Os05g09400.1 PSRP4, LOC_Os05g09400 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Len_g02488 PSRP4 component *(bTHXc) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Mp1g04130.1 PSRP4 component psPSRP4 of small ribosomal subunit proteome 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005840 ribosome IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006790 sulfur compound metabolic process IEP HCCA
BP GO:0016226 iron-sulfur cluster assembly IEP HCCA
MF GO:0016851 magnesium chelatase activity IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016872 intramolecular lyase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0031163 metallo-sulfur cluster assembly IEP HCCA
MF GO:0051002 ligase activity, forming nitrogen-metal bonds IEP HCCA
MF GO:0051003 ligase activity, forming nitrogen-metal bonds, forming coordination complexes IEP HCCA
InterPro domains Description Start Stop
IPR030826 Ribo_THX 36 92
No external refs found!