Spa_g22396 (SVR1)

Aliases : SVR1

Description : plastidial rRNA pseudouridine synthase *(SVR1) & original description: none

Gene families : OG0003742 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003742_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Spa_g22396

Target	Alias	Description	ECC score	Gene Family Method
AT2G39140	SVR1	pseudouridine synthase family protein	0.05	OrthoFinder output from all 47 species
Ala_g07739	SVR1	plastidial rRNA pseudouridine synthase *(SVR1) &...	0.04	OrthoFinder output from all 47 species
Ceric.20G017700.1	SVR1, Ceric.20G017700	plastidial rRNA pseudouridine synthase *(SVR1) &...	0.03	OrthoFinder output from all 47 species
LOC_Os03g05806.1	SVR1, LOC_Os03g05806	rRNA pseudouridine synthase (RsuA)	0.02	OrthoFinder output from all 47 species
Lfl_g16475	SVR1	plastidial rRNA pseudouridine synthase *(SVR1) &...	0.02	OrthoFinder output from all 47 species
Pir_g20012	SVR1	plastidial rRNA pseudouridine synthase *(SVR1) &...	0.05	OrthoFinder output from all 47 species
Sacu_v1.1_s0123.g021502	SVR1	plastidial rRNA pseudouridine synthase *(SVR1) &...	0.03	OrthoFinder output from all 47 species
Sam_g12462	No alias	plastidial rRNA pseudouridine synthase *(SVR1) &...	0.03	OrthoFinder output from all 47 species
Zm00001e000423_P001	SVR1, Zm00001e000423	rRNA pseudouridine synthase (RsuA)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	IEA	Interproscan
MF	GO:0009982	pseudouridine synthase activity	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016853	isomerase activity	None	Extended
MF	GO:0016866	intramolecular transferase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
BP	GO:0006413	translational initiation	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
MF	GO:0051536	iron-sulfur cluster binding	IEP	HCCA
MF	GO:0051540	metal cluster binding	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002942	S4_RNA-bd	142	184
IPR006145	PsdUridine_synth_RsuA/RluA	205	348

External Links

No external refs found!