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  5. Spa_g22121

Spa_g22121 (PAP(IV), nPAP)


Aliases : PAP(IV), nPAP

Description : poly(A) RNA polymerase & original description: none


Gene families : OG0000731 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000731_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g22121
Cluster HCCA: Cluster_210

Target Alias Description ECC score Gene Family Method Actions
Adi_g055926 PAPS2 poly(A) RNA polymerase & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g102291 PAP(IV), nPAP poly(A) RNA polymerase & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g102292 PAP(IV), nPAP poly(A) RNA polymerase & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g30704 PAP(IV), nPAP poly(A) RNA polymerase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene28614.t3 PAP(IV), nPAP,... poly(A) RNA polymerase & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g13917 PAP(IV), nPAP poly(A) RNA polymerase & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g13408 PAP(IV), nPAP poly(A) RNA polymerase & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g08262 PAP(IV), nPAP poly(A) RNA polymerase & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g27060 No alias poly(A) RNA polymerase & original description: none 0.02 OrthoFinder output from all 47 species
Smo169728 PAPS1 RNA processing.RNA 3-end polyadenylation.poly(A) RNA polymerase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004652 polynucleotide adenylyltransferase activity IEA Interproscan
BP GO:0043631 RNA polyadenylation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR007010 PolA_pol_RNA-bd_dom 357 413
IPR007010 PolA_pol_RNA-bd_dom 416 484
IPR002934 Polymerase_NTP_transf_dom 84 160
IPR007012 PolA_pol_cen_dom 11 354
No external refs found!