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  5. Spa_g22004

Spa_g22004


Description : not classified & original description: none


Gene families : OG0001265 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001265_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g22004

Target Alias Description ECC score Gene Family Method Actions
Adi_g018223 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g040822 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g08051 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g13731 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.27G020300.1 Ceric.27G020300 not classified & original description: pacid=50605628... 0.03 OrthoFinder output from all 47 species
Ceric.31G061400.1 Ceric.31G061400 not classified & original description: pacid=50575101... 0.03 OrthoFinder output from all 47 species
Cre16.g662702 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Dac_g27748 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g03584 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g06938 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g11399 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g23949 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g10217 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g16481 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g42841 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g02255 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g09433 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g26126 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc02g090910.3.1 Solyc02g090910 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Tin_g00806 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g01889 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016278 lysine N-methyltransferase activity IEP HCCA
MF GO:0016279 protein-lysine N-methyltransferase activity IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016763 pentosyltransferase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0018024 histone lysine N-methyltransferase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 101 161
IPR000504 RRM_dom 13 79
IPR000504 RRM_dom 299 356
No external refs found!