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  5. Spa_g19005

Spa_g19005 (LRL1)


Aliases : LRL1

Description : bHLH-type transcription factor & original description: none


Gene families : OG0000019 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g19005
Cluster HCCA: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
AT4G28811 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.04 OrthoFinder output from all 47 species
Aspi01Gene32584.t1 LRL3, Aspi01Gene32584 bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0083.g038807 HEC1 bHLH-type transcription factor & original description: CDS=1-1287 0.06 OrthoFinder output from all 47 species
Ceric.23G058700.1 Ceric.23G058700 bHLH-type transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
GSVIVT01018094001 UNE12 RNA biosynthesis.transcriptional activation.bHLH... 0.04 OrthoFinder output from all 47 species
GSVIVT01022111001 SPT RNA biosynthesis.transcriptional activation.bHLH... 0.03 OrthoFinder output from all 47 species
Gb_06182 No alias transcription factor (bHLH) 0.05 OrthoFinder output from all 47 species
Gb_22201 LRL3 transcription factor (bHLH) 0.07 OrthoFinder output from all 47 species
LOC_Os02g39140.1 LOC_Os02g39140 transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
InterPro domains Description Start Stop
IPR011598 bHLH_dom 259 304
No external refs found!