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  5. Spa_g18763

Spa_g18763


Description : large subunit of U2AF pre-RNA splicing auxiliary factor complex & original description: none


Gene families : OG0000716 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000716_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g18763

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00267190 ATU2AF65A,... RNA processing.RNA splicing.U2-type-intron-specific... 0.05 OrthoFinder output from all 47 species
AT1G60900 No alias U2 snRNP auxilliary factor, large subunit, splicing factor 0.02 OrthoFinder output from all 47 species
Adi_g057450 ATU2AF65A large subunit of U2AF pre-RNA splicing auxiliary factor... 0.02 OrthoFinder output from all 47 species
Adi_g117015 ATU2AF65A large subunit of U2AF pre-RNA splicing auxiliary factor... 0.02 OrthoFinder output from all 47 species
Ala_g02552 No alias large subunit of U2AF pre-RNA splicing auxiliary factor... 0.03 OrthoFinder output from all 47 species
Als_g10024 ATU2AF65A large subunit of U2AF pre-RNA splicing auxiliary factor... 0.03 OrthoFinder output from all 47 species
Als_g38682 ATU2AF65A large subunit of U2AF pre-RNA splicing auxiliary factor... 0.06 OrthoFinder output from all 47 species
Aop_g11505 No alias large subunit of U2AF pre-RNA splicing auxiliary factor... 0.07 OrthoFinder output from all 47 species
Aop_g31028 ATU2AF65A large subunit of U2AF pre-RNA splicing auxiliary factor... 0.04 OrthoFinder output from all 47 species
Azfi_s0104.g044794 ATU2AF65A large subunit of U2AF pre-RNA splicing auxiliary factor... 0.03 OrthoFinder output from all 47 species
Cba_g12276 ATU2AF65A large subunit of U2AF pre-RNA splicing auxiliary factor... 0.03 OrthoFinder output from all 47 species
Cba_g21572 No alias large subunit of U2AF pre-RNA splicing auxiliary factor... 0.04 OrthoFinder output from all 47 species
Cba_g38521 No alias large subunit of U2AF pre-RNA splicing auxiliary factor... 0.04 OrthoFinder output from all 47 species
Ceric.02G010500.1 ATU2AF65A,... large subunit of U2AF pre-RNA splicing auxiliary factor... 0.03 OrthoFinder output from all 47 species
Ceric.30G061500.1 Ceric.30G061500 large subunit of U2AF pre-RNA splicing auxiliary factor... 0.04 OrthoFinder output from all 47 species
Ceric.34G068300.1 Ceric.34G068300 large subunit of U2AF pre-RNA splicing auxiliary factor... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021464.4 No alias No description available 0.01 OrthoFinder output from all 47 species
Cre09.g391949 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.03 OrthoFinder output from all 47 species
Dac_g03340 No alias large subunit of U2AF pre-RNA splicing auxiliary factor... 0.02 OrthoFinder output from all 47 species
Dac_g14505 ATU2AF65A large subunit of U2AF pre-RNA splicing auxiliary factor... 0.04 OrthoFinder output from all 47 species
Dac_g28010 No alias large subunit of U2AF pre-RNA splicing auxiliary factor... 0.04 OrthoFinder output from all 47 species
Dcu_g07575 ATU2AF65A large subunit of U2AF pre-RNA splicing auxiliary factor... 0.03 OrthoFinder output from all 47 species
Dcu_g13843 No alias large subunit of U2AF pre-RNA splicing auxiliary factor... 0.02 OrthoFinder output from all 47 species
Dcu_g48783 ATU2AF65A large subunit of U2AF pre-RNA splicing auxiliary factor... 0.03 OrthoFinder output from all 47 species
Dde_g11336 No alias large subunit of U2AF pre-RNA splicing auxiliary factor... 0.04 OrthoFinder output from all 47 species
GSVIVT01018993001 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.04 OrthoFinder output from all 47 species
Gb_22808 ATU2AF65A large subunit of U2AF pre-RNA splicing auxiliary factor complex 0.03 OrthoFinder output from all 47 species
LOC_Os11g45590.1 ATU2AF65A, LOC_Os11g45590 large subunit of U2AF pre-RNA splicing auxiliary factor complex 0.03 OrthoFinder output from all 47 species
Len_g23866 No alias large subunit of U2AF pre-RNA splicing auxiliary factor... 0.03 OrthoFinder output from all 47 species
Len_g30816 ATU2AF65A large subunit of U2AF pre-RNA splicing auxiliary factor... 0.03 OrthoFinder output from all 47 species
Lfl_g04836 ATU2AF65A large subunit of U2AF pre-RNA splicing auxiliary factor... 0.03 OrthoFinder output from all 47 species
Lfl_g19286 No alias large subunit of U2AF pre-RNA splicing auxiliary factor... 0.02 OrthoFinder output from all 47 species
Lfl_g19287 ATU2AF65A large subunit of U2AF pre-RNA splicing auxiliary factor... 0.04 OrthoFinder output from all 47 species
MA_96898g0010 ATU2AF65A large subunit of U2AF pre-RNA splicing auxiliary factor complex 0.04 OrthoFinder output from all 47 species
Mp6g18430.1 No alias large subunit of U2AF pre-RNA splicing auxiliary factor complex 0.02 OrthoFinder output from all 47 species
Nbi_g35208 No alias large subunit of U2AF pre-RNA splicing auxiliary factor... 0.03 OrthoFinder output from all 47 species
Pir_g32508 ATU2AF65A large subunit of U2AF pre-RNA splicing auxiliary factor... 0.03 OrthoFinder output from all 47 species
Pir_g61224 No alias large subunit of U2AF pre-RNA splicing auxiliary factor... 0.04 OrthoFinder output from all 47 species
Pnu_g25870 ATU2AF65A large subunit of U2AF pre-RNA splicing auxiliary factor... 0.03 OrthoFinder output from all 47 species
Pnu_g32452 ATU2AF65A large subunit of U2AF pre-RNA splicing auxiliary factor... 0.05 OrthoFinder output from all 47 species
Ppi_g06381 No alias large subunit of U2AF pre-RNA splicing auxiliary factor... 0.02 OrthoFinder output from all 47 species
Ppi_g35948 No alias large subunit of U2AF pre-RNA splicing auxiliary factor... 0.05 OrthoFinder output from all 47 species
Ppi_g63646 ATU2AF65A large subunit of U2AF pre-RNA splicing auxiliary factor... 0.04 OrthoFinder output from all 47 species
Sam_g09275 No alias large subunit of U2AF pre-RNA splicing auxiliary factor... 0.04 OrthoFinder output from all 47 species
Sam_g26815 No alias large subunit of U2AF pre-RNA splicing auxiliary factor... 0.03 OrthoFinder output from all 47 species
Solyc02g062920.3.1 ATU2AF65A, Solyc02g062920 large subunit of U2AF pre-RNA splicing auxiliary factor complex 0.04 OrthoFinder output from all 47 species
Solyc12g008750.3.1 Solyc12g008750 large subunit of U2AF pre-RNA splicing auxiliary factor complex 0.05 OrthoFinder output from all 47 species
Spa_g04427 No alias large subunit of U2AF pre-RNA splicing auxiliary factor... 0.02 OrthoFinder output from all 47 species
Tin_g15579 No alias large subunit of U2AF pre-RNA splicing auxiliary factor... 0.03 OrthoFinder output from all 47 species
Zm00001e021119_P005 ATU2AF65A, Zm00001e021119 large subunit of U2AF pre-RNA splicing auxiliary factor complex 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000469 cleavage involved in rRNA processing IEP HCCA
MF GO:0004605 phosphatidate cytidylyltransferase activity IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006650 glycerophospholipid metabolic process IEP HCCA
BP GO:0006655 phosphatidylglycerol biosynthetic process IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
BP GO:0008654 phospholipid biosynthetic process IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0032048 cardiolipin metabolic process IEP HCCA
BP GO:0032049 cardiolipin biosynthetic process IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0045017 glycerolipid biosynthetic process IEP HCCA
BP GO:0046471 phosphatidylglycerol metabolic process IEP HCCA
BP GO:0046474 glycerophospholipid biosynthetic process IEP HCCA
BP GO:0046486 glycerolipid metabolic process IEP HCCA
MF GO:0070567 cytidylyltransferase activity IEP HCCA
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 309 378
IPR000504 RRM_dom 472 532
IPR000504 RRM_dom 190 261
No external refs found!