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  5. Spa_g18725

Spa_g18725 (THO2, AtTHO2)


Aliases : THO2, AtTHO2

Description : component *(THOC2/Tho2) of mRNP trafficking THO subcomplex & original description: none


Gene families : OG0003635 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003635_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g18725

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00138p00044110 THO2, AtTHO2,... RNA processing.messenger ribonucleoprotein particle... 0.06 OrthoFinder output from all 47 species
AT1G24706 THO2, AtTHO2 THO2 0.05 OrthoFinder output from all 47 species
Adi_g107430 THO2, AtTHO2 component *(THOC2/Tho2) of mRNP trafficking THO... 0.03 OrthoFinder output from all 47 species
Aev_g08657 THO2, AtTHO2 component *(THOC2/Tho2) of mRNP trafficking THO... 0.04 OrthoFinder output from all 47 species
Ala_g38322 THO2, AtTHO2 component *(THOC2/Tho2) of mRNP trafficking THO... 0.04 OrthoFinder output from all 47 species
Als_g01214 THO2, AtTHO2 component *(THOC2/Tho2) of mRNP trafficking THO... 0.05 OrthoFinder output from all 47 species
Aob_g29810 THO2, AtTHO2 component *(THOC2/Tho2) of mRNP trafficking THO... 0.04 OrthoFinder output from all 47 species
Aop_g07582 THO2, AtTHO2 component *(THOC2/Tho2) of mRNP trafficking THO... 0.02 OrthoFinder output from all 47 species
Aspi01Gene09833.t1 THO2, AtTHO2,... component *(THOC2/Tho2) of mRNP trafficking THO... 0.03 OrthoFinder output from all 47 species
Ceric.19G073400.1 THO2, AtTHO2,... component *(THOC2/Tho2) of mRNP trafficking THO... 0.07 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001428.15 THO2, AtTHO2 RNA processing.messenger ribonucleoprotein particle... 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001636.2 THO2, AtTHO2 RNA processing.messenger ribonucleoprotein particle... 0.01 OrthoFinder output from all 47 species
Dac_g15531 THO2, AtTHO2 component *(THOC2/Tho2) of mRNP trafficking THO... 0.08 OrthoFinder output from all 47 species
Dcu_g02056 THO2, AtTHO2 component *(THOC2/Tho2) of mRNP trafficking THO... 0.05 OrthoFinder output from all 47 species
Dde_g04015 THO2, AtTHO2 component *(THOC2/Tho2) of mRNP trafficking THO... 0.04 OrthoFinder output from all 47 species
GSVIVT01011619001 THO2, AtTHO2 RNA processing.messenger ribonucleoprotein particle... 0.06 OrthoFinder output from all 47 species
Gb_33812 THO2, AtTHO2 component THOC2/Tho2 of mRNP trafficking THO subcomplex 0.05 OrthoFinder output from all 47 species
LOC_Os01g68810.1 THO2, AtTHO2,... component THOC2/Tho2 of mRNP trafficking THO subcomplex 0.02 OrthoFinder output from all 47 species
Len_g01408 THO2, AtTHO2 component *(THOC2/Tho2) of mRNP trafficking THO... 0.04 OrthoFinder output from all 47 species
Lfl_g04297 THO2, AtTHO2 component *(THOC2/Tho2) of mRNP trafficking THO... 0.04 OrthoFinder output from all 47 species
MA_10430572g0010 THO2, AtTHO2 component THOC2/Tho2 of mRNP trafficking THO subcomplex 0.03 OrthoFinder output from all 47 species
MA_10431208g0010 THO2, AtTHO2 component THOC2/Tho2 of mRNP trafficking THO subcomplex 0.03 OrthoFinder output from all 47 species
Mp1g20320.1 THO2, AtTHO2 component THOC2/Tho2 of mRNP trafficking THO subcomplex 0.04 OrthoFinder output from all 47 species
Msp_g02102 THO2, AtTHO2 component *(THOC2/Tho2) of mRNP trafficking THO... 0.05 OrthoFinder output from all 47 species
Ore_g16129 THO2, AtTHO2 component *(THOC2/Tho2) of mRNP trafficking THO... 0.06 OrthoFinder output from all 47 species
Pir_g17399 THO2, AtTHO2 component *(THOC2/Tho2) of mRNP trafficking THO... 0.04 OrthoFinder output from all 47 species
Pnu_g06936 THO2, AtTHO2 component *(THOC2/Tho2) of mRNP trafficking THO... 0.03 OrthoFinder output from all 47 species
Ppi_g04007 THO2, AtTHO2 component *(THOC2/Tho2) of mRNP trafficking THO... 0.03 OrthoFinder output from all 47 species
Sam_g51475 No alias component *(THOC2/Tho2) of mRNP trafficking THO... 0.03 OrthoFinder output from all 47 species
Smo173562 THO2, AtTHO2 RNA processing.messenger ribonucleoprotein particle... 0.07 OrthoFinder output from all 47 species
Solyc05g017890.4.1 THO2, AtTHO2,... component THOC2/Tho2 of mRNP trafficking THO subcomplex 0.05 OrthoFinder output from all 47 species
Tin_g08678 THO2, AtTHO2 component *(THOC2/Tho2) of mRNP trafficking THO... 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043248 proteasome assembly IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
MF GO:0060090 molecular adaptor activity IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0071949 FAD binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR032302 THOC2_N 101 452
IPR032302 THOC2_N 485 632
IPR021726 THO_THOC2_N 634 709
IPR021418 THO_THOC2_C 967 1261
No external refs found!